To assess corneal innervation, whole corneas were excised and fixed in 2% fresh paraformaldehyde in 0.1 M phosphate buffer (pH 7.4) for 2 hours at room temperature or overnight at 4°C. After three thorough washings in 0.1 M PBS for 5 minutes each, the whole cornea was incubated with mouse monoclonal anti-β III-tubulin antibody (1:1000; Covance Antibody Services, Inc., Berkeley, CA) as previously described.
2 For double staining, chicken anti-calcitonin gene-related peptide (CGRP, 1:1500; Biotechnology, Inc., Temecula, CA) was added first in 1% goat normal serum plus 0.15% Triton X-100 in 0.1 M PBS for 72 hours and fixed with fresh paraformaldehyde for 30 minutes, then washed and double stained with anti-βIII-tubulin antibody.
22 After washing with 0.1 M PBS five times for 5 minutes each, the corneas were incubated with FITC-conjugated secondary antibodies (1:1500, Alexa Fluor goat antichicken IgG or Alexa Fluor 594 donkey antimouse IgG; Molecular Probes, Eugene, OR) for 2 hours at room temperature. Finally, the injured area of the cornea was viewed and photographed with a fluorescence microscope (Eclipse TE200; Nikon, Tokyo, Japan) equipped with a digital camera (DXM 1200; Nikon) using commercial imaging software (MetaVue; Molecular Devices, Sunnyvale, CA). The βIII-tubulin-positive tissue nerve area at the subepithelial level was calculated and compared with the total area with an image analysis program (Image pro Plus 4.5; Cybernetics, Inc., Silver Spring, MD). CGRP-positive nerves were calculated and compared with the β-III-tubulin positive nerves. Ten different images of different areas within the injured zone were analyzed per rabbit and then averaged.
To quantify neutrophils, corneas on day 2 and 4 after surgery were incised along the limbus and fixed in 4% paraformaldehyde at room temperature for 2 hours, cut in half and embedded in optimal cutting temperature (OCT) compound (Sakura Finetek USA, Inc., Torrance, CA). Serial cryostat sections (6 μm) were cut, air dried, and stored at −20°C until use. For immunofluorescence staining, the sections were washed in PBS, blocked with 10% goat serum, 0.1% Triton-X100 in PBS for 30 minutes at room temperature, and then incubated overnight at 4°C with a rat monoclonal neutrophil antibody (1:500; Abcam, Cambridge, MA). Afterwards, the sections were incubated with Alexa Fluor 488 goat antirat IG (H+L) antibody (Molecular Probes) for 1 hour at room temperature. 4′-6′-diamino-2-phenylindole (DAPI; Sigma-Aldrich, St. Louis, MO) staining was performed to localize the nuclei. The sections were examined with a fluorescent microscope under ×200 magnification. Positive cells were counted in a blind fashion from four randomly selected fields per cornea and averaged.