Riboprobes were synthezised from reverse transcription-polymerase chain
reaction (RT-PCR) products obtained from HTM RNA using a T7 promoter
tailed oligonucleotide. The cDNA was prepared from 0.5 μg total RNA
from HTM cells by using 200 U SuperScript reverse transcriptase (Gibco
Life Science Technology) and oligo(dT)-17 primer (Promega, Heidelberg,
Germany). The RT reactions were diluted to 0.5 ml. The PCR was
performed in a total volume of 50 μl using 1 U of native
Taq DNA polymerase (Appligen-Oncor, Heidelberg, Germany),
with the temperature profiles as follows: 36 cycles of 1 minute melting
at 94°C, 1 minute annealing, and 2 minutes extension at 72°C. After
the last cycle, the polymerization step was extended for a further 10
minutes so that all strands were completed. The primers were designed
according to the published structures of the human genes for tTgase and
fibronectin. In addition the reverse primer contained the sequence for
the T7 promotor (underlined below). The sequences, position, product
size and the annealing temperature of the primers were as follows:
forward, 5′-ATTGGTCCAGACACCATGCG-3′and reverse,
5′-
AATTGTAATACGACTCACTATAGGGCAACTTCCAGGTCCCTCGGAACATC-3′
(positions, 3752–4288; product size, 537 bp; annealing temperature,
56.8°C) for fibronectin,
39 forward,
5′-CAGAACAGCAACCTTCTCATCGAG-3′ and reverse,
5′-
AATTGTAATACGACTCACTATAGGGCTTGGACTCCGTAAGGCAGTCAC-3′
(positions, 1054–1881; product size, 784 bp; annealing
temperature, 59.7°C) for tTgase.
40 All primers were
purchased from MWG-Biotech (Ebersberg, Germany). After purification
with a Qiagen (Hilden, Germany) PCR Purification Kit, PCR products were
directly sequenced with fluorescent dideoxynucleotides on an automated
sequencer (Applied Biosystems model 377; Perkin-Elmer,Ü
berlingen, Germany). Using the digoxigenin-labeling RNA Kit from
Boehringer Mannheim, 1 μg of DNA was used as a template for in vitro
transcription. Digoxigenin labeling efficiency was checked by direct
detection of the labeled RNA probe with anti-digoxigenin–alkaline
phosphatase. After hybridization, the membrane was washed twice with
2× SSC, 0.1% sodium dodecyl sulfate (SDS) at room temperature,
followed by two washes in 0.1× SSC, 0.1% SDS for 15 minutes at
68°C. After hybridization and posthybridizations washes, the membrane
was washed for 5 minutes in washing buffer (100 mM maleic acid, 150 mM
NaCl, pH 7.5, 0.3% Tween 20) and incubated for 60 minutes in blocking
solution (100 mM maleic acid, 150 mM NaCl, pH 7.5, 1% blocking
reagent; Boehringer Mannheim). Anti-digoxigenin-AP (Boehringer
Mannheim) was diluted 1:10,000 in blocking solution and used to
incubate the membrane for 30 minutes. The membrane was then washed four
times, 15 minutes per wash, in washing buffer. The membrane was
equilibrated in detection buffer (100 mM Tris-HCl, 100 mM NaCl, pH 9.5)
for 10 minutes. For chemiluminescent detection, CDP-star (Boehringer
Mannheim) was diluted 1:100 in detection buffer and used to incubate
the filter for 5 minutes at room temperature. After air-drying, the
semi-dry membrane was sealed in a plastic bag. Chemiluminescence was
detected with the Lumi-Imager workstation (Boehringer Mannheim) with
exposure times ranging from 10 minutes to 1 hour. Chemiluminescent
signal quantification was performed with the Lumi Analyst software
package (Boehringer Mannheim).