Wild-type Crx cDNA was released from a mouse Crx clone (a
generous gift from Constance Cepko; GenBank accession number U77615) by
HindIII/
BglII digestion, gel purified, and cloned
at the
HindIII/
BglII sites to the 5′ coding
region of a GFP expression vector (pTH40). 3′ truncated or mutated Crx
sequences were amplified from the wild-type Crx with PCR using pfu DNA
polymerase (Stratagene, La Jolla, CA). Crx mutants harboring mutations
at codon 41 (R41W), 80 (E80A), 88 (K88T), 90 (R90W), and 98 (R98L) were
generated using site-directed mutagenesis based on the two-step
PCR.
14 The PCR primers were the following: Ps (sense
strand), 5′-agacccaagctggctagcgt-3′; antisense strand primers for Crx
deletion constructs: D164, 5′-actagatctgactccaaatggacacggtg-3′; D106,
5′-actagatctgctgttgctgtttctgct-3′; D98,
5′-actagatctgtcgctgctgtctgcatt-3′; D87,
5′-actagatctggaaccagacctggaccctg-3′; D78,
5′-actagatctgcagattgatcttaagagcaac-3′; D43,
5′-actagatctgccgctcccgccgctgcttc-3′; D35,
5′-actagatctgggcacttgagtatgggaca-3′. Primer pairs for Crx
missense mutant constructs were the following: R41W,
5′-aagcagcggtgggagcgga-3′ and 5′-tccgctcccaccgctgctt-3′; E80A,
5′-aatctgcctgcgtccagggt -3′ and 5′-accctggacgcaggcagatt-3′; K88T,
5′-aggtctggttcacgaatcgtag-3′ and 5′- ctacgattcgtgaaccagacct-3′; R90W,
5′-ggttcaagaattggagggcgaaat-3′ and 5′-atttcgccctccaattcttgaacc-3′;
R98L, 5′-cagacagcagctacagcagca-3′ and 5′-tgctgctgtagctgctgtctg-3′. PCR
was performed on a RoboCycler (Stratagene) with the cycle profiles: 1
cycle of 5 minutes at 94°C, 50 seconds at 52°C, and 1 minute at
72°C; 30 cycles of 1 minute at 92°C, 50 seconds at 52°C, and 1
minute at 72°C, and 1 cycle of 10 minutes at 72°C. Amplified Crx
fragments were digested with
HindIII/
BglII, gel
purified, and cloned to the GFP expression vector. Plasmid DNA was
prepared with QIAprep spin miniprep Kit (Qiagen, Valencia, CA) and
purified using Wizard Maxiprep DNA purification kit (Promega, Madison,
WI). Correct fusion of each construct was confirmed by DNA sequencing.