Total RNA was isolated from tissues of Sprague–Dawley rats using
TRIzol reagent (Gibco, Grand Island, NY), according to the protocol
provided by the manufacturer.
Recently, our laboratory successfully used semiquantitative RT-PCR to
correlate the expression of endocervical mucin mRNA to blood hormone
levels.
29 We used the same approach to study rMuc5AC,
ASGP, and rMuc1 mRNA expression by the rat ocular surface during
progression from mild to severe vitamin A deficiency. In this study,
rat
β-actin was used as the internal
control.
30 Total RNA from rat conjunctiva (1 μg/sample)
was subjected to reverse transcription using random hexamer primers as
previously described.
15 A 1-μl aliquot (one twentieth of
total volume) of the same RT products per sample was used in the PCR
amplification reaction for each of the genes investigated.
Oligonucleotide primers to the nontandem repeat region of rMuc1, ASGP,
and rMuc5AC were designed from published or GenBank sequences
(Table 1) . PCR amplifications were performed as previously
described.
15 The sequence of each PCR product was
confirmed by sequencing using the dideoxy-mediated chain termination
method.
PCR conditions were optimized for all genes studied using RT product
from adult rat conjunctival total RNA. The linear range of the
amplification reaction for β-actin, rMuc5AC, ASGP, and rMuc1 was
determined by checking amplification after each cycle from cycles 21 to
35 for β-actin, rMuc5AC, and ASGP, and from cycles 29 to 41 for
rMuc1. These determinations showed 27 cycles to be in the midlinear
phase for β-actin, rMuc5AC, and ASGP and 35 cycles to be in the
midlinear phase for rMuc1. All PCR amplifications started with
denaturation at 94°C for 5 minutes and ended with a final elongation
at 72°C for 7 minutes. The parameters for PCR amplifications were as
follows: rMuc5AC and β-actin: 27 cycles of denaturation at 94°C for
30 seconds, annealing at 55°C for 1 minute, and extension at 72°C
for 1 minute; ASGP: 27 cycles of denaturation at 94°C for 30 seconds,
annealing at 60°C for 1 minute, and extension at 72°C for 1 minute;
rMuc1: 35 cycles of denaturation at 94°C for 30 seconds, annealing at
58°C for 1 minute, and extension at 72°C for 1 minute.
The PCR products were run on a 1.5% agarose gel stained with ethidium
bromide and photographed with positive-negative film (Type 665;
Polaroid, Cambridge, MA). The amount of amplified product was
quantified for each sample from the negatives using a computing
densitometer (model 300A; Molecular Dynamics, Sunnyvale, CA) and
software (Image Quant, ver. 2.0; Molecular Dynamics). The final amount
of PCR product was expressed as the ratio of mucin gene amplified to
that of β-actin to account for any differences in starting
amounts of RNA.