Porcine and human TM cells and NIH-3T3 fibroblasts were cultured
as previously described.
35 36 For one group of studies,
stationary human anterior segment organ culture was used as previously
described.
37 The cultured trabecular cells were used as
confluent monolayers at passage 3 and were maintained serum free for 48
hours before and during treatments. Except as specifically indicated,
all the data shown are from porcine TM cells. The observations in
Figures 1 4 and 5 were replicated in humans, showing no significant
species differences. Five human cell lines and more than 20 different
porcine cell lines each pooled from 20 to 40 eyes were studied.
Double-stranded DNA analysis to estimate cell density in parallel
flasks was conducted for some studies, as directed by the manufacturer.
Because the differences between flasks were always less than ±10%,
this procedure was not used in all studies. The lane-to-lane
consistency of the protein-banding patterns on Western blot analysis
(see description later), which were stained for 15 minutes (Ponceau S
stain; Sigma), destained in 5% acetic acid, rinsed, and air-dried
before probing, further verified uniform gel loading. MMP and TIMP
analysis was conducted on culture medium collected 24, 48, or 72 hours
after treatments and stored in aliquots frozen at −20°C until use.
Analysis of PKC isoforms was conducted on extracts of cells at the
times indicated. For these extractions, media were replaced with 0.5 ml
of 4°C modified RIPA buffer
38 39 (2 mM EDTA, 2 mM EGTA,
1% NP-40, 0.5% sodium deoxycholate, 0.1% sodium dodecyl sulfate[
SDS], 100 mM NaF, 1 mM phenylmethylsulfonyl fluoride [PMSF], 20μ
g/ml leupeptin, 20 μg/ml aprotinin, 20 μg/ml pepstatin, and 50
mM Tris, [pH 7.5]) per T-75 flask (BD Biosciences, Oxnard, CA);
flasks were immediately placed on ice. Cells were scraped from the
flasks, and the extract was sonicated, centrifuged, and frozen. For
subcellular fractionation studies, cells were extracted at the
indicated times by rinsing in 4°C phosphate-buffered saline, scraping
the cells from the flasks in translocation buffer (2 mM EDTA, 2 mM
EGTA, 50 mM NaF, 2 mM dithiothreitol [DTT], 1 mM sodium
orthovanadate, 10 mM
NaP
4O
7, 1 mM PMSF, 20μ
g/ml leupeptin, 20 μg/ml aprotinin, 20 μg/ml pepstatin, and 30
mM Tris, [pH 7.4]) and sonicating on ice. The cytosolic fraction was
the supernatant, after centrifugation at 100,000
g for 30
minutes. The pellet was then resuspended in translocation buffer
containing 0.1% Triton X-100, incubated at 4°C for 30 minutes, and
centrifuged at 100,000
g to separate the membrane and the
insoluble particulate fractions.