In each experiment RNA from cells grown in normal medium was
processed in parallel with RNA from cells grown in high-glucose medium.
Reverse transcription was performed in a 20-μL volume, with 1 μg
RNA, 200 U reverse transcriptase, 2.5 μM random hexamers, 1 mM of
each dNTP, 5 mM MgCl
2, PCR buffer, and RNase
inhibitor, for 10 minutes at room temperature, followed by 40 minutes
at 42°C. At the end of reverse transcription, samples were heated to
95°C for 5 minutes, cooled on ice, and treated with RNase H (1 U) for
15 minutes at 37°C. The protocol for PCR was designed to measure the
level of fibronectin expression in relation to the expression of an
endogenous internal standard gene, β-actin. To prevent quantitative
inaccuracies deriving from competitive effects and different efficiency
and ranges of amplification of the two cDNAs,
33 34 the
fibronectin and β-actin cDNAs generated in the same reverse
transcription reaction were amplified in separate tubes containing
increasing volumes of the reverse transcription reaction (1, 2, and 4μ
L) to document amplification in the linear region for each cDNA. The
primers used to amplify the fibronectin and β-actin
(Table 1) were designed from published sequences.
35 36 The
specificity of the PCR was enhanced by using the hot-start
approach.
37 The PCR, containing the appropriate aliquot of
reverse transcription material with 0.2 μM of each primer, 2.5 U DNA
polymerase (Ampli
Taq; Roche Molecular Biochemicals,
Indianapolis, IN), MgCl
2 (1.5 mM for fibronectin,
1.8 mM for actin), and PCR buffer in a 50-μL volume, was performed in
a DNA thermal cycler (Hybaid, Middlesex, UK) using the following cycle
conditions: denaturation for 1 minute at 95°C for both fibronectin
and actin, annealing for 1 minute at 54°C for fibronectin, and 1
minute at 57°C for actin, and extension for 2 minutes at 72°C for
both fibronectin and actin. PCR was performed with 26 cycles for
fibronectin and 22 cycles for β-actin.