After 10 days of form deprivation or 10 days of form deprivation
followed by 1 day of recovery from form deprivation, chicks were
killed, and experimental and control eyes were enucleated. Each eye was
divided into anterior and posterior hemispheres, and the posterior
hemisphere was gently cleaned of all vitreous, retina, pigmented
epithelium, pecten, choroid, and muscle. The posterior scleral
hemispheres of control and experimental eyes were snap frozen in liquid
nitrogen and stored at −80°C. Four or five scleras were pooled
separately for each group and were pulverized using a cryogenic mill
under liquid nitrogen (Spex, Metuchen, NJ), and the frozen powder was
transferred to a test tube containing 6 ml reagent solution (Trizol;
Gibco, Gaithersburg, MD). The pulverized scleras were then homogenized
with a rotor–stator assembly (Virtis, Gardiner, NY) for 5 minutes at
room temperature, and RNA was isolated from the homogenate using a
standard protocol for the reagent. The RNA was quantified and its
purity assessed by spectrophotometry at 260 and 280 nm and by
denaturing gel electrophoresis.