The total cellular RNA for each day was reverse transcribed (RT)
according to RNA polymerase chain reaction (PCR) kit instructions
(GeneAmp; Perkin Elmer, Foster City, CA). Control reactions for each
day were performed in the absence of reverse transcriptase to ensure
purity of RNA preparations. The cDNA prepared from corneas was frozen
at −20°C and diluted as needed on the day of quantitation. PCR was
performed in a 50-μl reaction mixture containing 1× PCR buffer (60
mM Tris-HCl [pH 8.5], 15 mM
(NH4)SO4, 3.5 nM
MgCl2; Invitrogen: San Diego, CA), 400 μM dNTP
mixture (Perkin Elmer–Roche, Branchburg, NJ), 0.5 U Taq DNA
polymerase (AmpliTaq, Perkin Elmer–Roche), 5% dimethyl
sulfoxide (Sigma, St. Louis MO), 6 to 8 picomoles of primers, and 10μ
l cDNA (from RT reaction), with or without competitor plasmid. The
PCR protocol consisted of 35 cycles of denaturation at 95°C for 30
seconds, annealing at 57°C for 30 seconds, and extension at 72°C
for 2 minutes. The reaction mixture was prepared as a master mixture to
minimize reaction variation.