Total RNA was isolated from the fiber cell tissue by using reagent
according to standard procedures (Trizol; Gibco, Grand Island, NY).
Genomic DNA was removed from the total RNA before cDNA synthesis with a
30-minute incubation at 37°C with 0.1 U/μl DNase I
(Boehringer–Mannheim, Indianapolis, IN) in a volume of typically 150μ
l. Approximately 150 μg of fiber total RNA was obtained from 10
rats. mRNA was purified ( QuickPrep Micro mRNA Purification Kit;
Pharmacia Biotechnology, Piscataway, NJ).
First-strand synthesis and cDNA amplification were performed with fiber
mRNA using reagents (Perkin Elmer, Norwalk, CT). cDNA synthesis was
performed at 42°C for 15 minutes. The reaction mixture contained 5 mM
MgCl2, 1× polymerase chain reaction (PCR
buffer), 1 mM dNTPs (dATP, dTTP, dCTP, and dGTP), 2.5 μM
oligo(dT)16 primer, 1 U/μl RNase inhibitor, 2.5
U/μl M-MLV reverse transcriptase, and 1 ng mRNA. A control reaction
(no cDNA synthesis) was also conducted with the elimination of reverse
transcriptase.
Synthesized cDNA (10 μl) or control reaction (10 μl) were added to
separate PCR mixtures, which contained 1× PCR buffer, 3 mM
MgCl
2, 2.5 units DNA polymerase
(Ampli
Taq Gold, Perkin Elmer, Norwalk CT), and 0.5 μM
sense and antisense primers from the GLUT1, GLUT2, GLUT3, or GLUT4
primer sets listed in
Table 1 .
11 12 13 14 Reactions were also performed with
primers specific for connexin(Cx)43 and connexin50 (
Table 1 15 16 ) to verify that the mRNA was from fiber cells only
and not contaminated with epithelium.
17
After a 10-minute pre-PCR incubation at 95°C to activate the DNA
polymerase, amplification was performed using a two-step thermal
cycling program (Omnigene, Hybaid, Middlesex, UK) with a
1-minute period of denaturation at 94°C, and a 2-minute period for
annealing and extension at 60°C for 35 cycles. An extra 10-minute
period for extension at 72°C was performed to optimize ligation
conditions. Amplified PCR products were analyzed by electrophoresis on
0.8% agarose gels and subsequently cloned and sequenced.