Site directed mutagenesis was performed by using a quick-change
site-directed mutagenesis kit (Stratagene Inc.). The reaction mixture
contained SDM buffer (200 mM Tris-HCl [pH 8.8], 100 mM KCl, 100 mM
NH4SO4, 20 mM
MgSO4, 1% Triton X-100, 1 mg/ml
nuclease-free bovine serum albumin), 1 mM deoxynucleotide mix (dATP,
dCTP, dTTP, and dGTP), 50 ng GST-pGEX vector containing either p85
(N-SH2) or p85 (C-SH2) fusion proteins, and 125 ng sense and antisense
primers with mutations, in a total volume of 50 μl, followed by the
addition of 2.5 U pfu DNA polymerase using a programmable thermal
controller (PTC 100; MJ Research, Inc., Watertown, MA). The mutant
primers were: R358A (sense: ACC TTT TTG GTA GCA GAC GCA TCT ACT AAA;
antisense: TTT AGT AGA TGC GTC TGC TAC CAA AAA GGT) and R649A (sense:
ACT TTT CTT GTC GCG GAA AGC AGT AAA CAG; antisense: CTG TTT ACT GCT TTC
CGC GAC AAG AAA AGT). The extension parameters of SDM were as follows:
after denaturation at 95°C for 30 seconds, 16 cycles at 95°C for 30
seconds, 55°C for 1 minute, and at 68°C for 12 minutes (2 min/kb of
plasmid length). After temperature cycling, the reaction was placed on
ice for 2 minutes, after which 10 U DpnI restriction enzyme
was added, mixed, and incubated at 37°C for 60 minutes.
Transformation was performed using 1 μl of the DpnI
treated reaction to Epicurean XL-blue supercompetent cells, and the
reaction was placed on plates coated with Luria-Bertani (LB)
agar-ampicillin (100 μl/ml). The cDNAs of all mutants were sequenced
after PCR. The only mutations observed were those intentionally
introduced to create each desired mutation. The clones were induced
with isopropyl β-d-thiogalactopyranoside (IPTG; 1 mM),
and the expressed fusion proteins were purified through GST-Sepharose
4B matrix.