The S1 fraction was digested with some
glycosidase enzymes in an attempt to remove oligosaccharide side chains
of glycoproteins. The precipitated S1 fraction
(200 μg protein) was suspended in 75 μl of a solution containing 5
mM EDTA, 5 mM NEM, 1 mM PMSF, 0.1 mM pepstatin, 50 mM sodium acetate
(pH 5), and 20 mU neuraminidase (EC 3.2.1.18; Seikagaku). The solution
was then incubated at 37°C for 120 minutes. The same volume of a
solution containing 5 mM EDTA, 5 mM NEM, 1 mM PMSF, 0.1 mM pepstatin,
15 mM sodium acetate, and 50 mM Tris–HCl (pH 7.4) was added to the
sample solution, after which the mixture was incubated at 37°C for an
additional 120 minutes in the presence of 40 mU keratanase (EC
3.2.1.103; Seikagaku). Proteins were precipitated from the mixture with
ethanol and denatured by boiling for 2 minutes in 13 μl of a solution
containing 1% SDS and 10 mM sodium phosphate (pH 7.2). The sample
solution was diluted with 137 μl of a solution containing 1%
N-octyl-β-D-glucoside (Wako, Osaka, Japan), 5 mM EDTA, 5 mM NEM, 1 mM
PMSF, 0.1 mM pepstatin, 10 mM sodium phosphate (pH 7.2), 1 mU of
O-glycanase (EC 3.2.1.97; Boehringer Mannheim, Tokyo, Japan), and/or 5
U of N-glycanase (EC 3.2.2.18; Boehringer Mannheim), and the reaction
mixture was incubated at 37°C for 120 minutes.