For immunoprecipitation, a kit was used (Matchmaker Co-IP kit;
Clontech). Briefly, T7 promoters and either c-myc or
hemagglutinin (HA) epitope tags were incorporated respectively by PCR
into myocilin 64-504 and RLC cDNAs using the primers provided.
For further myocilin deletions, primers were: myoc 226
5′-ATTCGGGAAGCAGGAACTTCAGTTA-3′; myoc 109
5′-CCTGGAGCCTGGTCCAAGGTCAATT-3′; and myoc 310
5′-AAAATTGTAATACGACTCACTATAGGGCGAGCCGCCACCATGGAGGAGCAGAAGCTGATCTCAGAGGAGGACCTGTACCCTTCTAAGGTTCACATA-3′.
The products were in vitro transcribed and translated using a TNT
T7-coupled reticulocyte lysate system (Promega, Madison, WI) and 35S-labeled methionine (Amersham, Piscataway,
NJ). For coimmunoprecipitation, the translated
c-myc-myocilin 64–504 and HA-RLC were mixed at 30°C for 1
hour. The mixture was then incubated with co-IP buffer, protein A
agarose beads and either monoclonal c-myc or polyclonal HA
antibody at 4°C for 2 hours. After washing, the beads were
resuspended in SDS-loading dye. The proteins recovered were resolved on
a 4% to 15% linear gradient SDS-polyacrylamide gel. The gel was then
fixed and treated with FluoroEnhance (Research Products Inc.,
Mount Prospect, IL). The radioactive protein bands were visualized
using a phosphorescence imager (Cyclone Storage Phosphor System;
Packard, Meriden, CT). For negative control experiments, either the in
vitro translated products were incubated in the presence of exogenous
protein, or the antibody was replaced with a nontagged antibody.
Coimmunoprecipitation was also completed using human TM cell lysates.
Cultured TM cells were lysed on ice in 10 mM Tris-HCl (pH 8.0) 150 mM
NaCl, 0.5% NP-40, 2 mM phenylmethylsulfonyl fluoride, and 1× cocktail
protease inhibitors (Roche Molecular Biochemicals). Nuclei and cellular
debris were pelleted, and the lysate collected was precleared with
excess goat anti-rabbit IgG–conjugated affinity gel (ICN/Cappel, Costa
Mesa, CA). Proteins were immunoprecipitated with either anti-myocilin
or preimmune rabbit serum. Anti-myocilin was raised in rabbits against
a synthetic peptide corresponding to amino acids 33-43 (RTAQLRKANDQ).
The peptide was coupled to keyhole-limpet hemocyanin through a
C-terminal cysteine residue not present in myocilin. The synthetic
peptide was made, and the antibody was raised and affinity purified by
Alpha Diagnostic International (San Antonio, TX). The antibody
specificity was verified by Western blot analysis, as previously
described for another anti-myocilin peptide antibody.
18
The antibody–protein complex precipitated with the affinity gel was
resuspended in reducing sample buffer. Proteins were separated on a
10% SDS-PAGE and transferred to nitrocellulose (Protran; Midwest
Scientific, St. Louis, MO). The membrane was probed with
anti-RLC
23 (1:1000, Sigma, St. Louis, MO) and horseradish
peroxidase-conjugated goat anti-mouse IgM (1:10,000, ICN/Cappel).
Protein bands were visualized with a chemiluminescent substrate
(SuperSignal; Pierce, Rockford, IL).