Some of the amplified PCR products were subsequently subcloned into a T-vector
19 (Promega). Subcloned PCR products were then sequenced with an automatic DNA sequencer (LKB ALF; Pharmacia) using a dideoxy chain termination protocol.
20 Real-time PCR was also performed according to the manufacturer’s instructions. The PCR products were quantified by green nucleic acid gel stain (SYBR Green I; BMA, Rockland, ME)
21 22 and a fluorescein detection–specific thermal cycler (Smart Cycler; TaKaRa, Kyoto, Japan). We examined the gene expression of occludin; claudin-1, -11, and -12; and β-actin. Optimal conditions for each gene amplification were: 3.5 mM MgCl
2, 94°C for 30 seconds, 1 cycle; 94°C for 15 seconds, 60°C for 30 seconds, 72°C for 30 seconds, 86°C for 10 seconds, 35 cycles (for β-actin), 4.0 mM MgCl
2, 94°C for 30 seconds, 1 cycle; 94°C for 15 seconds, 60°C for 30 seconds, 72°C for 30 seconds, 84°C for 10 seconds, 35 cycles (for occludin and claudin-11 and -12), and 3.5 mM MgCl
2, 94°C for 30 seconds, 1 cycle; 94°C for 15 seconds, 60°C for 30 seconds, 72°C for 30 seconds, and 84°C for 10 seconds, 35 cycles (for claudin-1). After amplification, the PCR products were confirmed by melting-curve analysis and gel electrophoresis.
23