Eyes removed from normal or immunized animals at the various stages of EAU were embedded in optimal cutting temperature (OCT) compound, snap frozen, and stored at −30°C. Serial 8-μm cryostat sections of the eyes were taken onto poly(l-lysine)-coated slides and air dried overnight. Cells were isolated from diseased eyes at various phases of disease and cytospins made with ∼5 × 105 cells per slide. Before staining, tissue sections or cytospins were fixed in an acetone-methanol (1:1) mix at −20°C for 5 to 10 minutes and air dried. Sections were stained using either single or dual fluorescence for the following Abs: nitric oxide synthase (NOS)-2 (Clone 6, 1:100; Transduction Laboratories, Nottingham, UK) and infiltrating blood-borne macrophage marker ED1 (1:50, FITC conjugate; Serotec), and also through a standard avidin-biotin (alkaline phosphatase) technique for ED1 (1:100, purified, Serotec). The number of ED1-positive cells infiltrating throughout the retina and subretinal space, were counted throughout the section under a ×20 objective. Three sections per eye were counted. Cytospins were stained through the same technique as was used for mouse monoclonal anti-nitrotyrosine (Clone 1A6, 1:20; Upstate Biotechnology, Lake Placid, NY). All washes and dilutions were in Tris-buffered saline (TBS), unless otherwise stated. For dual fluorescent staining, sections were blocked with NRS (1:5) for 20 minutes, followed by overnight incubation with anti-NOS-2 (1:100) at 4°C. After three 5-minute washes, a secondary biotinylated rabbit anti-mouse Ig (1:100, 10% NRS; Dako, Glostrup, Denmark) was added for 30 minutes, followed by further washes. Sections were then incubated with streptavidin-Texas red (1:50) for 30 minutes, washed, and incubated in ED1-FITC-conjugated mAb alone for 1 hour. Washed sections were then mounted (Vectashield; Vector Laboratories, Burlingame, CA) and viewed under the appropriate excitation filters of a microscope, according to the manufacturer’s instructions (BH2-RFC; Olympus, Tokyo, Japan).