To explore bacterial localization within infected tissue, corneas were inoculated with GFP-transformed bacteria at 0, 6, or 12 hours after scratch injury. After 3 hours, animals were killed, a drop of fixative was applied to the ocular surfaces, and the corneas were excised. Isolated corneas were cryoprotected in 10% and 30% sucrose, embedded in optimal cutting temperature (OCT; Tissue-Tek; Sakura, Torrance, CA), and 6-μm sections were cut perpendicular to the length of the scratch with a cryostat (CM1850; Leica Instruments GmbH, Nussloch, Germany). Serial sections were examined by light and fluorescence microscopy (IX-70; Olympus). In each section, the full thickness of the stratified epithelium and corneal stroma were visualized at 1200× magnification and examined for the presence of GFP bacteria. The number of bacteria visualized in the following corneal layers were counted and recorded: stroma, basal cell, wing cell, and superficial cell. The total number of bacteria in each layer, for the entire cornea, was then tabulated by adding together the bacterial counts from every section.
To quantify bacterial colonization, mice inoculated at 0, 6, or 12 hours after scratch injury were killed 3 hours after bacterial challenge. The infected eyes were then enucleated and separately homogenized in 1 mL tryptic soy broth for enumeration of viable bacteria on TSA plates.