Since BSCR seemed to be an autoimmune illness, because familial cases other than twins
13 have appeared between brothers and sisters (Brézin A, Levinson R, Monnet D, personal observations, November 2002), we investigated the genetic polymorphisms of microsatellite markers located near the locus HLA-A. We studied microsatellite markers of DNA directly extracted from PBLs and not from cell lines, to avoid the in vitro mutations known to give rise to artifactual polymorphisms during cell culture.
14 Table 4clearly indicates the lack of disequilibrium linkage between any polymorphism of the microsatellite markers and BSCR. We can thus define two different complotypes: A*2901 and A*2902. The former is more extended than the latter. Surprisingly, although A*2902 and A*2901 differ only by a single mutation (G376C/D102H), their surrounding microsatellite polymorphisms appear to be fully different. HLA-A*2902, -B44, and -Cw16 is an ancestral haplotype probably fixed for some 10,000 years. Some microsatellites appear to have been fixed in frozen haplotype blocks, but others have mutated independently and will be informative if the same mutation is directly responsible for the disease phenotype
15 or reflects the short physical distance between the expressed gene implicated in the physiopathological process. For example, C5_4_5 does not exhibit Hardy-Weinberg equilibrium in a sample population examined,
16 because of an unknown molecular mechanism. More distant loci
D6S105 and
D6S276 exhibit diversity but without any link between BSCR or healthy status. A significant disequilibrium between the H63D mutation and HLA-A29-containing haplotypes in a Portuguese study has been reported.
17 In the absence of the study of family segregation in our work, we can only refer to assessments of A29 subjects homozygous for H63D mutations or homozygous for D63 or for wild-type H63 subjects for heterozygous A29. Of eight haplotypes from healthy subjects, only one A*2901 haplotype was D63. The three A*2901 patients with BSCR were wild-type H63. Fifty percent of haplotypes from homozygous A*2902 patients with BSCR and healthy subjects studied are D63—so much so that there is a significant difference between D63 mutated or H63 wild-type frequencies in A*2901 and A*2902 subjects (
P = 0.03 using the Fisher exact probability test). In the Portuguese study,
17 43.5% of the 62 haplotypes containing HLA-A29 had the H63D mutation. Assuming that this HLA-A29 population is essentially A*2902, as Europeans tend to be (94% in the HLA-Diversity/Anthropology workshop (http://www.ncbi.nlm.gov/mhc/ihwg.fcgi)), there is no significant difference between this population and the A*2902 population presently studied (
P = 0.20 using the Fisher exact probability test). The H63D mutation is thought to be old, according to the high allele frequencies reported in a wide geographical distribution. Strong linkage disequilibrium at so large a distance could be explained rather by a coselection of this combination of alleles imposed by some biological advantage, such as the CD8
+ lymphocyte acting as an iron storage compartment, than by a founder effect. Finally, this linkage disequilibrium between HLA-A29 and H63D involves the A*2902 allele but not the A*2901 allele.