Using RNase-free conditions, in situ hybridization (ISH) was performed on 5-μm paraffin-embedded sections of the anterior segment of six human eyes. Sections were preheated for 4 hours at 60°C, dewaxed, and permeabilized with 20 μg/mL RNase free proteinase K in 50 mM Tris-HCl, at 37°C for 20 minutes. After a rinse in 1× phosphate-buffered saline (PBS), sections were refixed at 4°C with 4% paraformaldehyde in PBS. Hybridization with antisense DIG-labeled cRNA probes (20–80 ng/100 μL) was performed at 20°C lower than the melting temperature for each probe for 16 hours in hybridization buffer (2.5× SSC, containing 62.5% deionized formamide [vol/vol] and 12.5% dextran sulfate [wt/vol]) and 120 μg/mL salmon sperm DNA). The sections were rinsed in DEPC-treated water, washed for 10 minutes at 25°C in 2× SSC, for 20 minutes at 50°C in 0.1× SSC, 60 minutes at 50°C in 0.05× SSC and 50% (vol/vol) deionized formamide, and 15 minutes at 25°C in Tris-buffered saline (TBS) with 1% bovine serum albumin (BSA). Hybridized DIG-labeled probes were detected after incubation at 37°C for 1 hour with anti-DIG alkaline phosphatase Fab fragments (750 U/mL) diluted 1:100 in 50 mM Tris-HCl. After final washes at room temperature in TBS-1% BSA, probes were visualized using 4-nitroblue-tetrazolium chloride (NBT) and 5-bromo-4-chloro-3-indolylphosphate (BCIP) chromogen precipitation. To examine the PE in more detail, indirect fluorescence-ISH was performed by incubating the sections at 37°C overnight with 1:6 anti-DIG-fluorescein Fab fragments (Roche Molecular Biochemicals) prepared according to the manufacturer’s protocol. After final washes at 25°C in PBS-0.5%BSA, the sections were mounted in medium containing 4′6-diamidino-2-phenylindole (DAPI; Vectashield; Vector Laboratories, Peterborough, UK), and visualized with 494-nm (fluorescein) and 360-nm (DAPI) wavelength excitation filters, emitting 523-nm (yellow-green) and 460-nm (blue) fluorescence, respectively. In control experiments, antisense DIG-labeled cRNA probes in a 60-fold excess of unlabeled antisense cRNA probe, sense cRNA probes, or no probe was used.