The RGC-5 cells were seeded in 100-mm tissue culture dishes and serum deprived as described earlier. After various periods of serum deprivation, the cells were collected, pelleted, and washed three times in equal volumes of phosphate-buffered saline (PBS). They were then resuspended in 200 μL of lysis buffer (50 mM Tris, 150 mM NaCl, 10% glycerol, 1 mM EGTA, 1 mM Na orthovanadate, 5 μM ZnCl2, 100 mM NaF, 10 μg/mL aprotinin, 1 μg/mL leupeptin, 1 mM phenylmethylsulfonyl fluoride [PMSF], 0.4 μg/mL okadaic acid, and 1% Triton X-100), sonicated, and centrifuged. The protein concentrations of the resultant supernatants were determined by the Bradford-Lowry method, and the samples were stored at −80°C until used for immunoblot analysis.
Lysates from control and serum-deprived RGC-5 cells were subjected to SDS-PAGE and immunoblot analyses with enhanced chemiluminescence (ECL) detection (Kirkegaard and Perry Laboratories Inc., Gaithersburg, MD) to compare the levels of the various caspases, Bcl-2/Bax.
23 25 The antibodies against caspases 3 and -9 and Bcl-2 and Bax were purchased from Santa Cruz Biotechnologies (Santa Cruz, CA) and used at a 0.2-μg/mL concentration. To ensure the equal loading of protein in each lane, the blots were reprobed with an antibody against β-actin. For cytochrome
c-release assays in the cytosol, the mitochondria-free cytosolic extracts and heavy mitochondrial fractions from control and serum-deprived RGC-5 cells were prepared
23 25 and subjected to immunoblot analysis with a commercially available antibody against cytochrome
c (Santa Cruz Biotechnologies) as described.