Rat eyes were dissected and retina, RPE, choroid, or RPE-choroid tissues were quickly collected in lysis buffer. Total RNA was isolated using a kit (RNeasy; Qiagen, Chatsworth, CA) according to the manufacturer’s description. First-strand cDNA was synthesized with 0.2 to 1 μg of total RNA in 20 μL buffer (50 mM Tris-HCl, 75 mM KCl, 3 mM MgCl
2) containing 1 μM oligo(dT)
12-18 or random hexamer, 0.5 mM dNTP, 10 mM DTT, 40 U RNase inhibitor, 200 U reverse transcriptase (Superscript II; Life Technologies, Gaithersburg, MD). Based on the manufacturer’s recommendation, the reaction was incubated at 42°C for 1 hour and heat inactivated at 70°C for 15 minutes, and then the cDNAs from two reactions with different primers were pooled. PCR was performed with 1 μL pooled cDNA in 50 μL buffer containing 5 U DNA polymerase (
pfu Turbo; Stratagene, La Jolla, CA), 0.2 mM dNTP, 0.5 μM primers. Primers for VEGF were selected to target all four VEGF isoforms based on GenBank data (accession no. M27281;
http://www.ncbi.nlm.nih.gov/Genbank ; provided in the public domain by the National Center for Biotechnology Information, Bethesda, MD). The primer sequences were as follows: forward primer 150f (5′-3′): CGA AAC CAT GAA CTT TCT GCT G; reverse primer 876r (5′-3′): TCT GTA TCA GTC TTT CCT GGT GAG. The reaction was cycled as follows: 4 minutes at 94°C; 35 cycles of 1 minute at 94°C, 1 minute at 55°C and 1 minute at 72°C; and a final extension of 15 minutes at 72°C. PCR products were run on a 1.5% agarose gel, purified (Gel Purification Kit; Qiagen), and cloned into a vector (pCR Blunt II TOPO; Invitrogen, Carlsbad, CA) according to the instructions in the kit manual. Clones were analyzed by restriction enzyme digestion and sequenced at the University of California, Berkeley DNA sequencing facility (Prism 477 sequencer; Applied Biosystems, Foster City, CA).