The presence of a specific MMP protein in retinal homogenates was determined by gelatin zymography, as previously described.
32 34 This technique detects both the latent proenzyme and active enzyme because SDS activates the proenzyme, thus allowing both the latent and active forms of the MMP to degrade the gelatin matrix; however, the difference in size of the latent and active forms allows them to be differentiated on the gel. In brief, retinas from two eyes were homogenized in 400 μL lysate buffer, containing 1% Triton X-100, 100 μM phenylmethylsulfonylfluoride, and protein inhibitor cocktail (Roche, Mannheim, Germany) in TBS (50 mM Tris-HCl [pH 7.6], 5 mM CaCl
2, 150 mM NaCl, 0.05% Brij35 [Sigma, St. Louis, MO], 0.02% NaN
3). The supernatant was collected, and the samples were assayed immediately or stored at −80°C before use. Protein concentrations were measured with an assay kit (BCA Protein Assay Reagent Kit; Pierce, Rockford, IL) using albumin as the standard. Aliquots containing 1.5 mg protein were added to 40 μL gelatin-conjugated sepharose beads (Gelatin Sepharose 4B; Amersham Pharmacia Biotech AB, Uppsala, Sweden) for affinity precipitation, and incubated overnight at 4°C in a rotator. The beads were rinsed 3 times with 500 μL TBS, transferred to 50 μL TBS in 10% DMSO, and incubated 30 minutes at 4°C. The supernatants were then collected after centrifugation (1 minute at 200
g). Each sample was mixed with an equal volume of Tris-Glycine SDS sample buffer (LC2676; Invitrogen, Carlsbad, CA), incubated for 10 minutes at room temperature (RT), then separated on a 10% gelatin zymogram gel (Invitrogen). Gels were soaked in 1× zymogram renaturing buffer for 30 minutes at RT, incubated in 1× zymogram developing buffer for 2 days at 37°C, stained with Coomassie blue (0.25% in a mixture of methanol, H
2O, and acetic acid at a ratio of 9:9:2) for 5 hours, destained for 2 hours, and then dried.