RNA was prepared from ARPE19 cells with or without exposure to oxidative stress (RNeasy Mini Kit; Qiagen, Tokyo, Japan) and quantified by ultraviolet spectrometry at 260 nm. RT was then performed (First-Strand cDNA Synthesis Kit; Amersham Biosciences, Piscataway, NJ) to obtain cDNA for PCR. Real-time PCR was performed on a thermocycler (Light Cycler; Roche Diagnostics, Burgdorf, Switzerland) with nuclear stain (SYBR Green; Applied Biosystems, Inc., Foster City, CA) reagents according to the manufacturer’s instructions. Amplification of PCR products was quantified by measurement of fluorescence associated with binding of double-stranded DNA to the SYBR green dye in the reaction mixture. The sequences of the primers used in this study were as follows: human CTGF forward primer, 5′-CGGCTTACCGACTGGAAGAC-3′, and reverse primer, 5′-CGTCGGTACATACTCCACAG-3′; human VEGF forward primer, 5′-CAGCGCAGCTACTGCCATCCAATCGAGA-3′, and reverse primer, 5′-GCTTGTCACATCTGCAAGTACGTTCGTTTA-3′; human TGF-β1 forward primer, 5′-CAACAATTCCTGGCGATACCTCA-3′, and reverse primer, 5′-GGTAGTGAACCCGTTGATGTCCA-3′; human HO-1 forward primer, 5′-CCAGCGGGCCAGCAACAAAGTGC-3′, and reverse primer, 5′-AAGCCTTCAGTGCCCACGGTAAGG-3′; and human β-actin forward primer, 5′-TCCTCCCTGGAGAAGAGCTA-3′, and reverse primer, 5′-TCCTGCTTGCTGATCCACAT-3′ as the internal control.
This assay allows accurate and specific quantification of amplified PCR products by measuring the fluorescence produced by fluorescence resonance energy transfer after the simultaneous hybridization of two gene-specific fluorophore-labeled DNA oligonucleotides to adjacent sequences within the amplified product. After an initial denaturation step of 95°C for 1 minute, PCR involved 45 cycles at 95°C for 10 seconds, 60°C for 1 second, and 72°C for 10 seconds.