The retina was removed, fixed in 4% paraformaldehyde in 0.1 M phosphate buffer (PB; pH 7.4) for 24 hours, and cryoprotected in 30% sucrose in PB. Twenty-micrometer coronal sections were cut and collected directly onto slides (Superfrost; Fisher Scientific, Pittsburgh, PA). Sections were treated for 10 minutes in 0.3% hydrogen peroxide in PB containing 0.9% NaCl (PBS) to block potential endogenous peroxidase. After several washes in PB, sections were incubated overnight at room temperature in PBS containing 0.3% Triton X-100 (PBST) with a mix of chicken anti-TrkB antibody (1:20,000, a gift from Louis F. Reichardt) and mouse anti-tyrosine hydroxylase (TH; 1:500; catalog no. 5280; Chemicon, Temecula, CA). The secondary antibodies were anti-mouse-tetramethylrhodamine isothiocyanate (TRITC; 1:300; Jackson Laboratories, Bar Harbor, ME) and biotinylated anti-chicken (1:400; Vector Laboratories, Peterborough, UK) in PBST. The anti-mouse was left to incubate on the slides for 3 hours in total. At the end of the second hour of incubation, the anti-chicken was added and incubated for 1 hour. After three washes, sections were incubated in streptavidin-horseradish peroxidase (HRP) for 45 minutes (1:200, tyramine peroxidase revelation kit; NEN Life Sciences, Cologne, Germany). After three washes, the sections were incubated in FITC-linked tyramine (1:400, NEN Life Sciences) for 10 minutes. After several washes, slides were coverslipped in antifade medium (Vectashield; Vector).
Fluorescent images were captured with a digital camera (Hamamatsu, Hamamatsu City, Japan) and the cognate software provided, using the blue (for FITC-labeled TrkB) or the green (for TRITC-labeled TH) filter of the microscope.
Control experiments were performed on sister sections. The omission of either the anti-TrkB or the anti-TH antibody induced a specific absence of labeling for each of them, proving specific labeling and non–cross talk with the other fluorescent filter.