Mice were anesthetized and injected with virus or Vero cell extract, as described. On days 6, 8, and 11 PI, the contralateral eyes of HSV-1– and mock-injected mice were enucleated and pooled, and total RNA was isolated (TRIzol Reagent; Invitrogen-Gibco, Grand Island, NY). For immunohistochemical staining, the contralateral eyes of virus- and mock-injected mice were enucleated at days 9 and 14 PI, embedded in optimal cutting temperature (OCT) compound (Tissue-Tek; Sakura Finetek USA, Inc., Torrance, CA) and sectioned at a thickness of 6 μm. For quantitation of cytokines using the cytometric bead array, the contralateral eyes of HSV-1–infected and mock-injected mice were enucleated. The enucleated eyes were dissected into anterior and posterior sections with the aid of a stereomicroscope. The anterior section containing the cornea and the iris was discarded, and the posterior sections of five eyes were pooled. The eye samples were digested in 600 U/mL collagenase IV (Sigma-Aldrich, St. Louis, MO) at 37°C in a 5% CO2 incubator for 45 minutes. After collagenase treatment, the digested tissues were passed through a cell strainer (pore size, 70 μm; BD Biosciences-Falcon, Bedford, MA). The cells were then counted and placed into round-bottomed, 96-well plates at a concentration of 5 × 105 cells per well in RPMI 1640 medium supplemented with 10% FCS. Coincident with enucleation of the uninoculated eye, submandibular lymph nodes were also removed, and lymphocytes were isolated and plated in round-bottomed, 96-well plates at a concentration of 5 × 105 cells per well in RPMI 1640 medium with 10% FCS. The cells derived from the eye and submandibular lymph nodes were cultured at 37°C in a 5% CO2 incubator. After 24 or 48 hours of culture, the supernatants were collected and stored at −80°C.