Fresh retinas were rapidly dissected and homogenized with an electric pestle (Kontes, Vineland, NJ) in ice-cold lysis buffer: 20 mM Tris (pH 8.0), 135 mM NaCl, 1% NP-40, 0.1% SDS, and 10% glycerol supplemented with protease inhibitors (1 mM phenylmethylsulfonyl fluoride, 10 μg/mL aprotinin, 1 μg/mL leupeptin, and 0.5 mM sodium orthovanadate). After incubation for 30 minutes on ice, homogenates were centrifuged at 10,000 rpm for 10 minutes, the supernatants were removed and resedimented for an additional 10 minutes, to yield solubilized extracts. Alternatively, 200 to 300 μg of protein was immunoprecipitated with anti-pan Trk 203, as described.
37 Retinal extracts (75–100 μg) or immunoprecipitated samples were resolved on 15% or 8% SDS polyacrylamide gels, respectively, and transferred to nitrocellulose filters (Bio-Rad Life Science, Mississauga, Ontario, Canada). To block nonspecific binding, filters were placed in 10 mM Tris (pH 8.0), 150 mM NaCl, 0.2% Tween-20 (TBST) and 5% dry skim milk for 1 hour at room temperature. Blots were then incubated for 16 to 18 hours at 4°C with each of the following primary antibodies: anti-human c-
myc (2 μg/mL; Oncogene Research), anti-phosphotyrosine (4G10, 1 μg/mL; Upstate Biotechnology, Waltham, MA), anti-rat TrkB
in (3 μg/mL) or anti-actin (10 μg/mL; Chemicon, Temecula, CA). Membranes were washed in TBST and incubated in peroxidase-linked secondary antibodies (0.5 μg/mL, GE Healthcare, Baie d’Urfé, Quebec, Canada) for 1 hour at room temperature. Blots were developed with a chemiluminescence reagent (ECL; GE Healthcare) and exposed to autoradiograph film (X-OMAT; Eastman Kodak, Rochester, NY).