Sixteen rats were divided into four groups (four rats in each group). An optic nerve crush was performed in the right eye in three groups. Retinal sections of the right eye were prepared for RNFL thickness measurement at 1, 2, and 4 weeks after optic nerve crush. One group of rats was used for each time point. For baseline data, the optic nerve was not crushed in the remaining group of rats, and the right eye was processed similarly. Immediately after the recording of the fundus by SLO, the eyes were enucleated after administration of an anesthetic overdose of intraperitoneal pentobarbital sodium. The anterior segment was removed and a small marking cut was placed on the edge of the posterior eye cup to identify the superior retinal portion. The eye cup was fixed in 4% paraformaldehyde-0.5% glutaraldehyde and 0.1 M phosphate-buffered saline for 2 hours at room temperature, and was embedded in mounting compound (Tissue-TeK OCT; Sakura Finetechnical, Tokyo, Japan) followed by freezing with dry ice. Serial frozen sections (16 μm thick) were collected along the vertical meridian of the globe. After they were stained with hematoxylin-eosin, the retinal sections were observed under an optical microscope (Eclipse TE300; Nikon Corp., Kanagawa, Japan) and were recorded as JPEG files with a digital cooled CCD camera (DS-5Mc-L1; Nikon) and a personal computer (Dimension 8300; Dell Inc., Round Rock, TX). For each eye, RNFL thickness of three consecutive sections derived from a location approximately 500 μm temporal from the center of the optic disc (∼1 disc diameter from the edge of the optic disc) was measured using image-analysis software (Image-Pro Express 4.0; MediaCybernetics, Inc., Silver Spring, MD) and averaged. The RNFL thickness in the retinal sections was compared by the ΔF determined from SLO images.
We also counted the number of cells in the ganglion cell layer in the retinal sections used for RNFL thickness measurements and calculated the mean number of cells in each eye.