Western blot analysis of HMMCs transfected with pCMV.Flt23K and pCMV.Flt24K first involved freeze fracturing with a mortar and pestle, and placement in 200 μL RIPA buffer (Tris-HCl, NaCl, NP-40, Na-deoxycholate, and protease inhibitors). After incubation in RIPA buffer for 1 hour, cell samples were sonicated on ice four times at 15-second intervals at level-4 intensity. Immunoprecipitation of HMMCs with anti-sFLT antibody (epitope specific for domains 2 and 3; Santa Cruz Biotechnology, Santa Cruz, CA) began with pipetting 50 μL of corneal cells into a 1.5-mL Eppendorf tube (Fisher Scientific, Pittsburgh, PA) and adding 50 μL of sterile PBS to the tube. Anti-sFLT antibody was added to the tube in a 1:200 concentration, and the resultant mixture was incubated overnight at 4°C on a refrigerated shaker. The following day, 400 μL of agarose beads were placed in a separate Eppendorf tube and washed with an equal amount of PBS. For washing, the beads and PBS were inverted several times and spin pulsed in a minicentrifuge. After the supernatant was removed, another 400 μL of PBS was added to the beads, and the procedure was repeated. After three washes, the agarose beads were resuspended in 40 μL of PBS. The washed bead mixture was aliquoted into the Eppendorf tube containing human corneal cells and incubated overnight at 4°C on a refrigerated shaker. The following day, the beads were collected and washed by using the aforementioned procedure. The beads were resuspended in a 50 μL 1:19 mixture of 2-mercaptoethanol (BME):Laemmli buffer. After the beads were boiled for 5 minutes and submerged in ice for 5 minutes immediately thereafter, they were centrifuged at 4°C, 10,000 rpm, for 10 minutes. The supernatant was collected and loaded into 6% SDS-polyacrylamide gels. After transferring these gels, NCP (nitrocellulose) membranes were probed for the VEGF and KDR proteins. NCP membranes were blocked for 1 hour at room temperature with 10% milk in PBS and then incubated for 2 hours in a dilution of 1:1000 VEGF primary antibody (BD-PharMingen):10% milk. The appropriate secondary antibody dilution of 1:5000 (BD-PharMingen) was used to incubate the membranes for 2 hours at room temperature. After they were washed with PBS-Tween 20, the membranes were developed on film (BioMax Light Film; Eastman Kodak, Rochester, NY) using a chemiluminescence kit (ECL; Pierce, Rockford, IL). To probe for KDR, NCP membranes were stripped (Restore Western Blot Stripping Buffer; Pierce) and reprobed in a dilution of 1:250 VEGFR-2 primary antibody (Chemicon)-10% milk and 1:1000 of the appropriate secondary antibody (Santa Cruz Biotechnology).
HMECs (transfected with pCMV.Flt24K, empty pCMV, and PBS) and control and plasmid-injected mouse corneas were subjected to the same Western blot analysis protocol without immunoprecipitation. NCP membranes were probed for XBP-1 protein in a dilution of 1:200 XBP-1 primary antibody (Santa Cruz Biotechnology) 10% milk and 1:1000 of the appropriate secondary antibody (Abcam, Cambridge, MA).
Western blot analysis for caspase-3 on was also performed mouse corneal samples without immunoprecipitation. NCP membranes were probed for caspase-3 in a dilution of 1:1000 caspase-3 primary antibody (Cell Signaling Technology, Danvers, MA)-10% milk and 1:1000 of the appropriate secondary antibody (Abcam).