Six whole ONs (extending from ONH to optic chiasmatic nucleus) were dissected from the sclera of three 3-month-old DBA/2J mice, 8-month-old glaucomatous DBA/2J mice, and 10-month-old glaucomatous DBA/2J mice. Tissues are then immediately homogenized in a glass-Teflon Potter homogenizer in lysis buffer (20 mM HEPES [pH 7.5], 10 mM KCl, 1.5 mM MgCl2, 1 mM EDTA, 1 mM EGTA, 1 mM DTT, 0.5% CHAPS, and complete protease inhibitors; Roche Biochemicals, Indianapolis, IN). Ten micrograms of pooled samples from each group were separated by PAGE and electrotransferred to PVDF membranes. The membrane was blocked with 5% nonfat dry milk, 0.05% Tween-20, PBS, incubated with monoclonal mouse anti-OPA1 antibody (H-300/1:1000; BD Transduction Laboratories, San Diego, CA) or monoclonal mouse anti-actin antibody (Ab-1/1:3000; Calbiochem, La Jolla, CA), rinsed with 0.05% Tween-20/PBS, incubated with peroxidase-conjugated goat anti-mouse IgG (1:2000; Bio-Rad, Hercules, CA) or goat anti-rabbit IgM (1:5000; Calbiochem), and developed with chemiluminescence detection (ECL Plus; GE Healthcare, Piscataway, NJ). Images were analyzed by digital fluorescence imager (Storm 860; GE Healthcare), and band densities were normalized by using actin as cytosolic fraction calibrator and VDAC as a mitochondrial fraction calibrator (ImageQuant TL; GE Healthcare).
To assess the subcellular distribution of OPA1, the cytosolic and mitochondrial fractions were extracted from freshly isolated ONs by differential centrifugation (Mitochondrial Isolation Kit; Pierce Biotechnology, Rockford, IL). Briefly, the tissues were immediately homogenized in a glass-Teflon Potter homogenizer in reagent A, mixed with an equal volume of reagent C, and then centrifuged at 700g for 10 minutes at 4°C. For the cytosolic fraction, the supernatant was centrifuged at 12,000g for 15 minutes at 4°C, and the supernatant was collected as the cytosolic fraction. For the mitochondrial fraction, the mitochondrial pellet was lysed with 2% CHAPS in Tris-buffered saline and centrifuged at 12,000g for 15 minutes at 4°C, and the supernatant was collected. Western blot analysis was performed as just described. Equal loading was confirmed by reprobing cytosolic fraction samples with actin, and the mitochondrial fraction samples with polyclonal rabbit anti-VDAC antibody (Ab-5/1:1000; Calbiochem). Band densities were normalized by using actin as cytosolic fraction calibrator and VDAC as mitochondrial fraction calibrator (ImageQuant TL; GE Healthcare). Good separation of the cytosolic and mitochondrial fractions was confirmed by the observation of negligible staining when cytosolic fraction blots were reprobed with antibodies to VDAC and when mitochondrial fraction blots were reprobed with antibodies to actin (data not shown).