Rat eyes (
Table 1 , groups 3–5) were enucleated and the retinas isolated and immersion-fixed in 2% paraformaldehyde in phosphate-buffered saline (PBS [pH 7.4]) for 10 minutes at room temperature. The left eyes of mice from group 6
(Table 1)were enucleated and immersion-fixed in 2% paraformaldehyde in PBS for 2 hours at room temperature. The retina was carefully isolated from the retinal pigment epithelium and a small point mark was made in the superior quadrant using a high-temperature, fine-tip cautery pen (2200°F; Medi-Pak Surgical Cautery; McKesson Medical-Surgical, Richmond, VA) to orient the retina.
Whole retinas were incubated in 10% donkey serum with 0.3% Triton X-100 in PBS (PBST) for 2 to 4 hours at room temperature. All retinas were incubated for 3 to 5 days at 4°C in primary antibodies diluted in PBST. Rat retinas labeled with a rabbit polyclonal anti-active caspase-3 (CM-1; BD Biosciences, Mountain View, CA) were double labeled with mouse anti-neuronal nuclei (NeuN; 1:1000, mAb377; Chemicon), monoclonal mouse anti-tyrosine hydroxylase (TH; 1:10,000, T2928; Sigma-Aldrich), or mouse anti-agrin (1:1000, clone AGR131; StressGen, Victoria, BC, Canada). Ins2Akita mouse retinas were double labeled with an affinity-purified polyclonal goat anticholine acetyltransferase (ChAT; 1:100, AB144P; Chemicon) and the TH antibody. Retinas were then incubated overnight at 4°C in F(a,b′)2 fragments of affinity-purified secondary antibodies (Jackson ImmunoResearch, West Grove, PA) in PBS with 10% donkey serum: donkey anti-rabbit RRX (1:1000), donkey anti-mouse Cy2 (1:1000), donkey anti-goat Cy5 (1:1000), and donkey anti-rabbit Cy3 (1:2000). To stain the nuclei of all cells, bis-benzimide (0.5 μg/mL Hoechst; Sigma-Aldrich) was added to the secondary antibody incubation. All retinas were coverslipped ganglion cell side up in aqueous mounting medium (Aqua poly/mount; Polysciences Inc., Warrington, PA).