Primary antibodies included rabbit anti-BDNF (1:500; Chemicon, Temecula, CA), mouse anti-CNTF (1:100; Chemicon Inc.), rabbit anti-calbindin (1:1000; Chemicon), rabbit anti-calcineurin (1:500; Chemicon), mouse anti-calretinin (1:1000; Chemicon), rabbit anti-crystallin-β (1:400, BSR Laboratory Department of Biochemistry, Hyderabad, India), rabbit anti-crystallin-γ (1:100; Samuel Ziegler, National Eye Institute, Bethesda, MD), mouse anti-CSPG (neurocan, 1:100; Abcam, Cambridge, UK), mouse anti-ED1 (1:500; Serotec, Oxford, UK), mouse anti-GFAP (for astrocytes; at 1:500; Sigma-Aldrich, St. Louis, MO), mouse anti-MAP2 (1:500; Sigma-Aldrich), mouse anti-MMP2 (1:200; Chemicon), mouse anti-MMP14 (1:400; Chemicon), mouse anti-neurofilament 200 kDa (for neurons; 1:400; Sigma-Aldrich), rabbit anti-neurofilament 70 kDa (1:200; Chemicon), rabbit anti-nestin (for stem cells, 1:200; Chemicon), and rabbit anti-oncomodulin (1:500 Swant, Bellinzona, Switzerland), anti rHu-bFGF (C60201, 1:500; Promocell). These were visualized with the following secondary antibodies: TRITC-conjugated goat anti-mouse (at 1:300; Sigma), Cy2-conjugated goat anti-mouse (1:200; Jackson ImmunoResearch Laboratories, Inc.), TRITC-conjugated goat anti-rabbit (1:400; Sigma-Aldrich), and Cy2-conjugated goat anti-rabbit (1:200; Jackson ImmunoResearch Laboratories Inc.). All antibodies were diluted in PBS.
For immunocytochemical analyses, the cells were fixed with 4% PFA for 10 minutes. They were subsequently permeabilized by incubation at −20°C in methanol for 10 minutes. After three rinses with PBS, the cells were incubated in PBS containing 10% FCS (PAA Laboratories GmbH) for blocking before they were stored overnight at 4°C with the appropriate primary antibodies. The following day, the slides were again rinsed three times with PBS before they were incubated with the secondary antibody at room temperature for 1 hour. After three final rinses in PBS, the slides were embedded in Mowiol with DAPI (1 mg/mL; 4′, 6-diamidino-2-phenylindole; Sigma-Aldrich) to stain the nuclei. The number of rinses was reduced in later immunocytochemical procedures, to lower cell loss. Control experiments consisted of incubation of the cells with only the secondary antibody. To quantify the data from immunocytochemistry, labeled cells in 12 randomized fields were counted with the corresponding filter. The numbers of cells stained was used to determine the arithmetic mean ± SD. The same 12 fields were then counted with phase-contrast optics to determine the total number of cells. The proportion of cells stained is presented as a percentage of the total. On each glass slide, negative controls were stained with the secondary antibody only, and counting was executed as for the experimental samples.