Formalin fixed, paraffin-embedded eye specimens were sectioned (4 μm) and mounted on slides (Superfrost Plus; Fisher Scientific, Pittsburgh, PA). Before hybridization, the sections were treated with proteinase K (5 μg/mL in 50 mM Tris, 5 mM EDTA and pH 8) and dried after dehydration. The probes were denatured at 80°C for 3 minutes before addition of the hybridization mix (1 × SALTS, 40% deionized amide, 10% dextran sulfate, t-RNA [1 mg/mL], and 0.1 M DTT). The sections were incubated overnight at 55°C with the sense or antisense probes in high humidity. After hybridization, excess probe was removed by washing under increasing stringency at 55°C in 0.1% SDS and 10 mM DTT with 2 × SSC, 1 × SSC, and 0.2 × SSC, and the sections were RNase A treated (20 μg/mL in 1 NTE buffer) at 44°C before stringency washing and dehydration with 0.3 M ammonium acetate in ethanol. Sections were air dried and dipped in NTB2 emulsion (VWR Scientific, Herlev, Denmark) and exposed for 7 days. After development, slides were counterstained with hematoxylin, air dried, and coverslipped.
Hybridization signals from antisense probes were compared with sense probes obtained from the same plasmids. Sections of small intestine were used as the positive control.
Slides were examined for MMP mRNA expression by in situ hybridization under light- and dark-field illumination microscopy, with particular attention to areas of contact between the main bulk of the tumor and the sclera in areas with MASS changes
(Fig. 1B) .