To improve the sensitivity of phosphoprotein identification, phosphoproteins were enriched using a specific kit (BD Biosciences/Clontech, San Jose, CA). After charging and equilibrating the spin columns containing immobilized metal-affinity chromatography media, samples were diluted in acidic buffer and were bound by maintaining the low pH. The phosphoprotein mixture was denatured in 8 M urea, reduced with dithiothreitol, alkylated with iodoacetamide, diluted with 100 mM NH4HCO3 (to dilute urea to 2 M), and digested with modified trypsin. Digested samples was desalted using C18 spin columns (Pierce, Rockford, IL), dried by speed vacuum, and dissolved in a loading buffer containing 20% ACN, 100 mM acetic acid (HAc), and 2 mM ammonium acetate (NH4Ac). Samples were then loaded on a preconditioned strong cation-exchange (SCX) cartridge, washed twice with 20 μL loading buffer, and eluted using 20 μL HAc/NH4Ac buffers (15 eluting buffers of increasing ionic strength and pH were used, and the final buffer contained 10 mM HAc and 615 mM NH4Ac with pH 6.5). The SCX fractions were concentrated to approximately 1 μL using a speed vacuum and were diluted to 7 μL with 5% ACN/0.1% formic acid. Five microliters of the samples was loaded on a C18 precolumn (LC Packing), eluted to a 75 μm × 100 mm C18 capillary column (Symmetry; Waters), and separated with a solvent gradient up to 50% ACN. The LC elute was coupled to a nano-LC sprayer, and MS/MS spectra were acquired with a mass spectrometer (Q-TOF; Waters) in data-dependent scan mode. Only ions with 2+, 3+, or 4+ charges were selected for MS/MS analysis. MS/MS spectra were searched against SwissProt database with ProteinLynx 4.0 (Waters). The mass error allowed was set to 25 ppm, and a minimum of three consecutive residues was required for a positive peptide match. All positive peptide matches were examined manually, and protein identification was based on more than two peptides showing a manually confirmed sequence match.