Flatmounted mouse retinas and the rat eyes that underwent ONC were fixed in 4% PFA for 2 h, incubated in 4% sucrose-PBS (w/v) overnight at 4°C, kept in 20% sucrose (w/v) –5% glycerol (v/v) for 2 days at 4°C, and embedded in optimal cutting temperature (OCT) compound (Sakura Finetec, Torrance, CA). Transverse cryosections at 14 μm were fixed in ice-cold acetone for 10 minutes, air-dried, and washed with PBS. The sections were blocked in 3% BSA-PBS with 0.3% Triton X-100 (BSA-PBST) for 30 minutes at room temperature (RT) and incubated with the primary antibodies against cleaved caspase-3 (rabbit monoclonal, 1:100 in BSA-PBST; Cell Signaling Technology, MA), GFAP (rabbit polyclonal, 1:400; DAKO, Glostrup, Denmark) or CD11b (rat polyclonal, 1:100; Serotec, Oxford, UK for the mouse retinas, and mouse monoclonal, 1:100; GeneTex, San Antonio, TX for the rat retinas) overnight at 4°C in a humidified chamber. The sections incubated with the blocking buffer alone served as negative controls. After three PBS-washes of 5 minutes, the sections were incubated with biotin conjugated rabbit anti-rat (1:200; DAKO) secondary antibodies followed by Cy3-conjugated streptavidin (1:500; Jackson ImmunoResearch, West Grove, PA) or with Cy3-conjugated goat anti-rabbit antibodies (1:400; Jackson ImmunoResearch) or with Alexa 488-conjugated goat anti-mouse antibodies (1:400; Molecular Probes) for 1 h at RT. The nuclei were then counterstained with DAPI and the samples were analyzed by fluorescence microscopy.