To examine the effect of BIX on BiP mRNA expression, RGC-5 cells were seeded in six-well plates at a density of 1.4 × 105 cells per well. After the cells had been incubating for 24 h, they were exposed to 50 μM BIX in 1% FBS DMEM for 0.5, 1, 2, 4, 6, 8, or 12 h, or to 2, 10, 50, or 150 μM BIX in 1% FBS DMEM for 6 h. Total RNA was extracted (RNeasy Mini Kit; QIAGEN KK, Tokyo, Japan) according to the manufacture’s protocol. The total RNA was divided into microtubes, and frozen to −80°C. RNA concentrations were determined spectrophotometrically at 260 nm. First-strand cDNA was synthesized in a 20-μl reaction volume using a random primer (Takara, Shiga, Japan) and Moloney murine leukemia virus reverse transcriptase (Invitrogen, Carlsbad, CA). PCR was performed in a total volume of 30 μL containing 0.8 μM of each primer, 0.2 mM dNTPs, 3 U Taq DNA polymerase (Promega), 2.5 mM MgCl2, and 1× PCR buffer. The amplification conditions for the semi-quantitative RT-PCR analysis were as follows: an initial denaturation step (95°C for 5 minutes), 20 cycles of 95°C for 1 minute, 55°C for 1 minute, and 72°C for 1 minute, and a final extension step (72°C for 7 minutes). The numbers of amplification cycles for the detection of BiP and β-actin were 18 and 15, respectively. The primers used for amplification were as follows: BiP: 5′-GTTTGCTGAGGAAGACAAAAAGCTC-3′ and 5′-CACTTCCATAGAGTTTGCTGATAATTG-3′; β-actin: 5′-TCCTCCCTGGAGAAGAGCTAC-3′ and 5′-TCCTGCTTGCTGATCCACAT-3′.
PCR products were resolved by electrophoresis through 6% (w/v) polyacrylamide gels. The density of each band was quantified using an imaging program (Scion Image Program; Scion Corporation, Frederick, MD).