Genotype and allele frequencies between cases and controls were compared by using the χ
2 analysis. Tests for Hardy-Weinberg equilibrium (HWE) were performed by χ
2 analysis. Pair-wise linkage disequilibrium (LD) was examined as described by Devlin and Risch.
19 We used logistic regression models to estimate the odds ratios (OR) and corresponding 95% confidence intervals (CI) for the effect of genotypes on risk of AMD adjusted for other risk factors. Haplotype frequencies were estimated from genotype data by using (Phase ver. 2.1),
20 21 and the haplotype distribution between cases and controls was compared by a likelihood ratio test. In addition, we examined the relation between haplotypes and AMD outcome by logistic regression analysis by using a baseline-parameterization approach,
22 adjusting for age, smoking, body mass index, diabetes, prior myocardial infarction or stroke, hypertension, and randomized treatment group. A two-tailed
P ≤ 0.05 was considered to represent a statistically significant result. All analyses were performed on computer (SAS ver. 9.1/Genetics; SAS, Cary, NC). For analysis of single
CRP SNPs, the study had 80% power to detect ORs ranging from 1.8 for the most prevalent SNP to 2.2 for the least prevalent SNP.
23 Finally, we calculated the attributable fraction in the population and its 95% CI as a measure of the proportion of AMD associated with the
CFH polymorphism.
24