Signal intensities of inner and outer retina were analyzed from 1 pixel-thick central retina (±0.4–1 mm from the optic nerve). For quantitative analysis, intraretinal signal intensities were analyzed using the program NIH IMAGE and derived macros.
20 Changes in receiver gain between animals were controlled by setting the signal intensity of a fixed region of noise in each rat to a fixed value. In retinas from control and RCS rats, a 1 pixel-thick line (representing the border between inner and outer retina) was set at 4 pixels (or approximately 94 μm) posterior to the clearly defined vitreoretinal division. Another 1 pixel-thick line was set at 3 pixels (or approximately 70 μm) posterior from this inner/outer division. Pixels immediately anterior to each line were considered representative of inner and outer retina, respectively, and were analyzed as previously described.
12 These retinal regions analyzed are also indicated here (see
1 Figs. 2 3 ). In the RCS rats, comparison of retinal signal intensity with histology obtained at P57 revealed that the debris layer (a characteristic lesion of the RCS phenotype in which the subretinal space fills with shed photoreceptor outer segments) also accumulated manganese (data not shown). Thus, in RCS rats, the thickness measured on MEMRI included this debris zone despite the fact that that the neurosensory retinal thickness was significantly lower than that in age-matched controls. In other words, “retinal” thickness measured from MEMRI of older RCS rats likely overestimated the retinal thickness. In the elevated IOP model, approximately 50% of the inner retina degenerates by 7 days after ischemia; no gross degeneration is noted by 24 hours after ischemia.
1 16 21 22 23 In this case, a 1 pixel-thick line was set 2 pixels (or approximately 47 μm) anterior to the well-defined scleroretinal border. Another 1-pixel line was drawn anteriorly by 3 pixels. As described, pixels immediately anterior to each line were considered representative of inner and outer retina, respectively, and were analyzed as previously described.
12 Images collected with the present parameters, from rats that were not injected with MnCl
2, had retinal signal intensities lower than 50 arbitrary units (data not shown). Thus, only retinas with intensities greater than 50 were included in the final intensity analysis, though, as mentioned, whole retinal thicknesses were measured from all retinas.