The specificity of TLR4 was shown by immunoblotting. Infected corneas were excised within the 2-mm central area and stored at −80°C until assayed. Samples were weighed, thawed, minced, homogenized with a glass pestle in 1.5 mL PBS, sonicated for 30 seconds, and clarified by centrifugation at 12,000g for 10 minutes. A 100-μL aliquot of the supernatant was assayed with SDS-polyacrylamide gels (Mini-Protean II system; Bio-Rad Laboratories, Mississauga, ON, Canada) and blotted onto polyvinylidene difluoride membranes, followed by blocking with 5% dry milk in Tris-buffered saline containing 0.1% Tween 20. Membranes were then incubated overnight with primary antibodies (2 μg/mL in blocking buffer, 4°C), washed for 60 minutes, and stained with specific secondary antibodies at room temperature for 60 minutes. After extensive washing of the membranes, hybridized bands were detected with an enhanced chemiluminescence kit (PerkinElmer Life Sciences, Boston, MA). The primary antibody used for immunoblotting was TLR4 antibody (ab1386; Abcam, Cambridge Science Park, Cambridge, UK).
For the immunohistochemical study, infected eyes were enucleated and embedded in optimal cutting temperature compound (Tissue-Tek, Tokyo, Japan) and stored at −80°C. Continuous 6-μm sections were cut at −20°C with a microtome cryostat (Carl Zeiss, Thornwood, NY). The sections were mounted on poly-l-lysine–precoated slides (Polysciences, Warrington, PA), air dried, and fixed in cold acetone for 10 minutes. After blocking with normal goat serum, neighboring sections were incubated with 100 μL of the appropriately diluted primary antibody at 4°C overnight and then with fluorescein isothiocyanate (FITC)-conjugated secondary antibody at room temperature for 2 hours. Finally, the sections were covered with mounting media and examined by fluorescence microscopy (Eclipse E800; Nikon, Tokyo, Japan). The primary antibody used in this study was either anti-F4/80 (specific for murine macrophages; Serotec, Oxford, UK; clone Cl:A3–1) or anti TLR4 (BD PharMingen, San Diego, CA; clone MTS510). To find the correlation of macrophages and TLR4 distribution, primary antibodies of anti-F4/80 and anti-TLR4 and FITC-conjugated and rhodamine red-X (RRX)-conjugated secondary antibodies were incubated during the procedures described.