Reverse-transcribed total RNA for 10 genes was prepared from the TG of the heat-treated groups of 17Syn
+ and 17ΔPst(LAT
−) latent infected mice. The nine adaptive immunity genes were analyzed to confirm the relative quantitative expression levels. One other gene was also analyzed by this method as a random appraisal of the expression levels pattern in the remaining 20 genes. Primer pairs used were specifically designed and synthesized by Integrated DNA Technologies (IDT; San Diego, CA). These were immunoglobulin κ chain variable 32 (
IgK-V32), forward primer, 5′-TGT CTG CAT CCC TTG GAG ACA CAA-3′, reverse primer, 5′-ACT AAA CCT TGA TGG GAC GCC TGT-3′; immunoglobulin λ chain, variable 1 (
IgL-V1), forward primer, 5′-TGT TCG GTG GAG GAA CCA AAC TGA-3′, reverse primer, 5′-ACA CCA GTG TGG CCT TGT TAG TCT-3′,
IgL-V1 homologue, forward primer, 5′-ACA GTC ACA CTC ACT TGT CGC TCA-3′, reverse primer, 5′-TCT CCA ATC AGG GAG CCT GAG AAT-3′; immunoglobulin heavy chain 4 (
IgH-4 or serum
IgG1), forward primer, 5′-AGC CAG CGG AGA ACT ACA AGA ACA-3′, reverse primer, 5′-TGC TCT TCT GCA CAT TGA GCT TGC-3′; CD83 antigen (
CD83), forward primer, 5′-ATG AGC TCC ATC CTC AGA TGG CAA-3′, reverse primer, 5′-AAA GCA CTC ACG AGG TTG ACC AGA-3′; CD8 antigen alpha chain (
CD8A), forward primer, 5′-TCC TGG GAT CAC CAG CAT GCT TTA-3′, reverse primer, 5′-TTT GAC AGT CAG CGT CTT CCT CCA-3′; chemokine (C-C motif) ligand 8 (
CCL8), forward primer, 5′-GTG CTT CTT TGC CTG CTG CTC ATA-3′, reverse primer, 5′-AGA CAT ACC CTG CTT GGT CTG GAA-3′; adenosine deaminase (
ADA), forward primer, 5′-GGG AGA GCA AGC ATT TGG CAT CAA-3′, reverse primer, 5′-AGC CAC CAC GGT CTT CTG ATT GTA-3′; RIKEN 2010309G21 gene immunoglobulin lambda chain complex (
2010309G21RIKIgL), forward primer, 5′-ATG TAC TTT GCG ACG ACC TGG GAT- 3′, reverse primer, 5′-ACC AGT GCG ATA CAC CTA GAC GTT-3′; and otospiralin (
OTOS) forward primer, 5′-AAG AGT AGC CGG AAC ATT GGC AGT-3′, reverse primer, 5′-TCA GTT CAC TGA GGA CCA CCT TGT-3′. The real-time PCR for β-actin was performed concurrently: forward primer, 5′-GTG GGC CGC TCT AGG CAC CAA-3′, reverse primer, 5′-CTC TTT GAT GTC ACG CAC GAT TTC-3′. Reverse transcription was primed with T7-Oligo (dT) primer (Affymetrix, Inc.). Real-time PCR reactions were performed in a 20-μL volume containing a solution of 1× supermix (iQ SYBR Green; Bio-Rad, Hercules, CA), 0.5 μM forward primer, 0.5 μM reverse primer, and 1 μL cDNA or 20 ng reverse-transcribed total RNA. A four-step protocol was used: denaturation, 3 minutes at 95°C; amplification and quantification, 40 cycles for 15 seconds at 95°C and for 30 seconds at 60°C; melting curve, 60 to 95°C with a heating rate of 0.5°C per second; followed by cooling (MyiQ Single Color Real-Time PCR Detection System; Bio-Rad). A single peak melting curve was observed for each gene product. Relative quantitative expression levels were determined for each gene. All results are displayed as an expression ratio of the 17
Syn + latent TG to the 17ΔPst(LAT
−) latent TG after 1 hour of mouse heat treatment, normalized against β-actin expression levels using the 2
−ΔΔCT method.
43