Cells were incubated with or without 10 ng/mL PDGF-BB, as in our DNA microarray experiment, for 48 hours and then collected and lysed in sample buffer (50 mM Tris-HCl [pH 8.0], 150 mM NaCl, 1 mM EDTA, 1% Triton X-100, 0.1% SDS, 0.1% sodium deoxycholate, and 1 mM phenylmethylsulfonyl fluoride [PMSF]; Wako Pure Chemical Industries, Osaka, Japan). After sonication in ice water, the crude lysates were cleared by centrifugation at 22,000g for 30 minutes at 4°C. The total protein concentration of the lysates was measured by the Bradford assay. In our TM localization experiment, the cells were lysed in sample buffer (50 mM Tris-HCl [pH 8.0], 150 mM NaCl, 1 mM EDTA, and 1 mM PMSF), and the lysates were centrifuged at 50,000g for 30 minutes at 4°C. We defined the supernatants as lysates of intracellular TM. The precipitates, which were defined as lysates of cell membrane TM, were lysed in buffer (50 mM Tris-HCl [pH 8.0], 150 mM NaCl, 1 mM EDTA, 1% Triton X-100, 0.1% SDS, 0.1% sodium deoxycholate, and 1 mM PMSF).
Equal amounts of protein (20 μg) were subjected to 10% SDS-PAGE. The separated proteins were then electrotransferred to PVDF membranes (Immun-Blot; Bio-Rad, Hercules, CA). After electrotransfer, the blots were incubated for 60 minutes in blocking solution (0.3% dried low-fat milk/TTBS) on an orbital shaker. The primary (0.4 μg/mL mouse anti-TM [Santa Cruz Biotechnology, Santa Cruz, CA] or 20 ng/mL mouse anti-β-actin [Sigma-Aldrich, St. Louis, MO]) and secondary (1 μg/mL horseradish peroxidase–labeled mouse anti-IgG [Vector Laboratories, Burlingame, CA]) antibodies were prepared in blocking solution. Detection and quantification were achieved with a chemiluminescence kit (ECL Plus Western Blot Detection Kit; GE Healthcare, Buckinghamshire, UK) with a chemiluminescence imaging system (Light-Capture; ATTO Corp.).