For immunohistochemistry, eyes were enucleated from nontreated rats and EAU-induced rats on day 14 after immunization. Whole eyes were fixed in 4% paraformaldehyde in 1× phosphate-buffered saline (PBS). After fixation, the eyes were frozen in optimal cutting temperature compound, sectioned into 6- to 8-μm thick slices, and mounted on glass slides. The frozen sections were dried at room temperature for 1 hour and then washed in 1× PBS. Sections were blocked with 5% goat serum diluted in 1× PBS for 30 minutes and incubated overnight with either rabbit anti–HMGB-1 polyclonal antibody (dilution 1:200; Shino-Test, Kanagawa, Japan) or rabbit anti–RAGE polyclonal antibody (dilution 1:200; Santa Cruz Biotechnology, Santa Cruz, CA) at 4°C. On the following day, sections were incubated with Alexa Fluor 555 goat anti–rabbit IgG (2 μg/mL; Molecular Probes, Eugene, OR) and carbocyanine monomers (2 μM; TO-PRO-3; Molecular Probes) at room temperature for 1 hour, mounted in antifade mounting medium, and examined under a confocal microscope (LSM510; Carl Zeiss MicroImaging GmbH, Jena, Germany). Negative control samples were prepared in an identical fashion without incubation with anti–HMGB-1 or anti–RAGE antibody.
For immunohistochemical double labeling, sections were incubated overnight at room temperature with anti–CD68 antibody (dilution 1:200; Serotec, Oxford, UK) and either anti–HMGB-1 or anti–RAGE antibody. On the following day, sections were incubated with Alexa Fluor 555 goat anti–rabbit IgG (2 μg/mL) and Alexa Fluor 488 goat anti–mouse IgG (2 μg/mL; Molecular Probes) at room temperature for 1 hour, mounted in antifade mounting medium, and examined by confocal microscopy. Negative controls for immunohistochemical double labeling were again prepared in an identical fashion but without incubation with anti–HGMB-1 or anti–RAGE antibody. For statistical analysis, the number of HMGB-1–positive or RAGE-positive macrophages was calculated using ImageJ software (developed by Wayne Rasband, National Institutes of Health, Bethesda, MD; available at http://rsb.info.nih.gov/ij/index.html). Data represent the mean ± SD of three sections from each group (nontreated rats, CFA-immunized rats, and EAU-induced rats).