Genomic DNA was extracted by phenol-chloroform standard method from 500 μL whole blood collected in edetic acid. To detect the substitution of arginine for glycine responsible for the
ICAM-1 polymorphism G/R 241 in exon 4 of the
ICAM-1 gene, we developed an allele-specific polymerase chain reaction (ASPCR) method. We designated allele-specific primers 5′-CGTGGTCTGTTCCCTGGACG-3′, 5′-CGTGGTCTGTTCCCTGGACA-3′ (nucleotide number 638-657), using published sequence information on the point mutation of the
ICAM-1 gene,
38 and common primer 5′-GTCGTTGCCATAGGTGACTG-3′8. As an internal positive control, an additional primer pair for the glycoprotein IIIa gene
39 was used in all ASPCRs, with a pair of primers consisting of an allele-specific primer and a common primer, according to the method of Bein et al.
40 The positive control primer pair amplified the 247-bp fragment of glycoprotein IIIa gene. The ASPCR was performed in a total volume of 50 μL that contained 0.2 μg genomic DNA, each primer pair consisting of 20 picomoles of allele-specific primer and 20 picomoles of common primer, 15 picomoles of each positive control primer, 200 μM each dNTP, 10 mM Tris-HCl (pH 8.3), 50 nM KCl, 1.5 mM MgCl
2, and 1.5 units of DNA polymerase (AmpliTaq; Perkin-Elmer, Waltham, MA). The PCR reaction was performed for 35 cycles, each consisting of a denaturation step at 95°C for 30 seconds, 68°C for 30 seconds, and 72°C for 30 seconds in a PCR system (GeneAmp PCR System 9600; Perkin Elmer). The amplified PCR products were analyzed by 2% agarose gel electrophoresis followed by ethidium bromide staining and ultraviolet visualization.