Infected and control eyes were fixed in 4% paraformaldehyde and then embedded in paraffin. Sections from one (day 2, 7, and 28) or two (day 4, 10, and 14) rabbits per day were deparaffinized in xylene and then rehydrated in graded ethanol. The sections were incubated with 0.05% trypsin and 0.1% CaCl2 in water for 13 minutes at 37°C and 10 minutes at room temperature, then rinsed 3 × 10 minutes in 100 mM glycine and 2 × 2 minutes in PBS before being blocked for 20 minutes at room temperature with 10% FBS in PBS. The sections were stained for 1 hour at room temperature with a 1:100 dilution of mouse αCD79a (NB 600-557; Novus Biologicals, Littleton, CO), mouse αCD4 (MA1–81754; Affinity BioReagents, Golden, CO), mouse αCD8 (MA1–82,699; Affinity BioReagents), or mouse α neutrophil defensin 5 (HM4008; Hycult Biotechnology, Uden, The Netherlands) in blocking buffer. The sections were rinsed twice in PBS, stained for 30 minutes with a 1:200 dilution of AlexaFluor 594 goat α-mouse IgG (A11032; Invitrogen, Carlsbad, CA), rinsed, and mounted (Vectamount, H-5000; Vector Laboratories, Burlingame, CA). Control slides were prepared as just described from infected day-10 eyes, and were stained with primary or secondary antibodies only. The sections were viewed at 40× magnification with a fluorescence microscope (Axioplan 2; Carl Zeiss Meditec, Göttingen, Germany), and the number of positive cells was counted in five fields of view per structure. Images were also taken at 20× magnification, to demonstrate cell distribution throughout the tissue.