After DTI acquisition, the optic nerves were fixed and embedded in paraffin. Transverse 3-μm-thick sections matching the part of the optic nerve used for DTI maps were obtained for immunohistochemical examination. Sections were deparaffinized and rehydrated. Antigen retrieval was performed by incubating sections in 1 mM EDTA in a water bath at 95–100°C. To prevent nonspecific binding of antibodies, sections were blocked in 2% blocking buffer (Invitrogen, Carlsbad, CA) for 1 hour at room temperature. Sections were then incubated at 4°C overnight with primary antibodies, including mouse anti–myelin basic protein (anti-MBP; 1:1000; Abcam, Cambridge, UK) to assess myelin integrity, mouse anti-phosphorylated neurofilament H (SMI-31; 1:2000; Sternberger Monoclonals, Lutherville, MD) to assess the distribution of intact axons, mouse anti-nonphosphorylated epitope in neurofilament H (SMI-32; 1:2000; Sternberger Monoclonals) to assess the distribution of injured axons, or mouse anti-panaxonal neurofilament (SMI-312; 1:400; Sternberger Monoclonals) to assess the distribution of the total axons including both normal and injured axons. After rinsing in PBS, goat anti-mouse IgG conjugated with cyanine 3 (1:1000; Jackson ImmunoResearch, West Grove, PA) was used to visualize the immunoreaction. After washing, sections were coverslipped (Vectashield Mounting Medium, with 4′, 6′-diamidino-2-phenylindole; Vector Laboratories, Inc., Burlingame, CA).
Immunostained sections were examined with a fluorescence microscope equipped with a ×60 oil objective (Eclipse 80i, Nikon Instruments Inc., Melville, NY), and images were captured with a black–white charge-coupled device camera using image-capture and analysis software (MetaMorph; Universal Imaging Corp., Downingtown, PA). The absolute number of axons stained with SMI-31, SMI-32, SMI-312, and integral myelin sheath labeled with MBP were counted by image-analysis software (CellC;
http://www.cs.tut.fi/sgn/csb/cellc/).
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