Purification of the isoforms of FGF-2 was performed according to our published protocols with some modification.
48 CECs cultured in each culture condition on 100-mm tissue culture dishes were washed twice with sterile PBS. The extracellular matrix FGF-2 fraction was initially extracted with 2 M NaCl in 20 mM HEPES (pH 7.6) and then with 2 M NaCl in 20 mM sodium acetate (pH 4.5) to extract FGF-2 bound to high- and low-affinity receptors. The cells were then incubated in an enzyme-free cell dissociation solution (Chemicon, Temecula, CA) for 5 minutes at room temperature. The cells were detached by scraping, transferred to microcentrifuge tubes, and pelleted at 5000
g for 10 minutes. Nuclear and cytoplasmic proteins were extracted with a nuclear extraction kit containing cytoplasmic lysis buffer and nuclear lysis buffer (Chemicon), according to the manufacturer’s instructions. Briefly, the harvested cells were resuspended in two cell pellet volumes of cold cytoplasmic lysis buffer containing 1 mM PMSF, 1 μg/mL aprotinin, 1 μg/mL leupeptin, 1 μg/mL pepstatin, and 0.5 mM dithiothreitol and allowed to swell on ice for 15 minutes. IGEPAL CA-630 (Sigma-Aldrich) was then added to a final concentration of 0.1%, and the swollen cells were incubated for an additional 5 minutes on ice and homogenized with a 27-gauge needle. Nuclei were pelleted at 8000
g for 20 minutes at 4°C. The supernatant containing the cytosolic portion was transferred to a fresh tube and stored at −80°C until further use. The remaining pellet containing the nuclear portion was washed by centrifugation with cold nuclear extraction buffer containing 1 mM PMSF, 1 μg/mL aprotinin, 1 μg/mL leupeptin, 1 μg/mL pepstatin, and 0.5 mM dithiothreitol and then resuspended in two thirds of the original cell pellet volume of cold nuclear extraction buffer. Nuclei were disrupted by drawing and ejecting 10 times, with a syringe and a 27-gauge needle. Nuclear proteins were extracted at 4°C for 60 minutes with gentle agitation, using an orbital shaker. The nuclear protein extract was clarified by centrifugation at 16,000
g for 5 minutes at 4°C and then dialyzed (Slide-A-Lyzer MINI Dialysis Unit, 7K MWCO; Pierce Biotechnology, Rockford, IL). Nuclear and cytoplasmic protein concentrations were determined using the Bradford reagent (Bio-Rad Laboratories, Inc.) with bovine serum albumin as a standard. To verify the purity of the fractions, 15 μg of nuclear or cytoplasmic proteins were immunoblotted with lamin B and α-tubulin antibodies. These verified nuclear and cytoplasmic proteins were used for FGF-2 estimation.