Flow cytometry was used to analyze the expression of surface molecules/receptors such as CD40, CD80, CD86, CD152, and TGFβ receptor on B cells. The following antibodies were used to stain the RPE-exposed B cells and control B cells: FITC-conjugated anti–mouse CD40 (clone HM40–3; eBioscience), PE-conjugated anti–mouse CD80 (B7–1, clone 16–10A1; eBioscience), FITC-conjugated anti–mouse CD86 (B7–2, clone GL1; eBioscience), PE-conjugated anti–mouse CD152 (CTLA-4, clone UC10–4B9; BioLegend, San Diego, CA), PE-conjugated anti–mouse TGFβ RII (R&D Systems, Minneapolis, MN), and FITC-conjugated anti–mouse MHC class II antibody (clone M5/114.15.2; eBioscience). The following isotype control antibodies were used: FITC-conjugated hamster IgG, FITC- or PE-conjugated rat IgG, and PE-conjugated goat IgG. After 72 hours of activation with anti–CD40, LPS, and rIL-4, B-cell cultures were harvested, washed twice, and stained with the antibodies. Before staining, the cocultured cells were incubated with mouse Fc block (Fcγ III/II receptor, clone 2.4G2; BD Biosciences, San Diego, CA) for 15 minutes Cells (1 × 106) were stained for 30 minutes at 4°C in the dark. Stained samples were analyzed using a cytometer (FACSCalibur; BD Biosciences).
Expression of TGFβ on RPE cells was detected using the following three-step staining protocol: RPE cells, cultured in the presence or absence of B cells, were stained with a mouse anti–TGFβ1, anti–TGF-β2, or anti–TGF-β3 monoclonal antibody (clone 1D11; R&D Systems) for 1 hour at 4°C in the dark. After washing, a secondary biotin-conjugated anti–mouse IgG (BD Biosciences) was added and incubated as described previously. After a second wash, the final detection step was the addition of FITC-conjugated streptavidin (BD Biosciences), which was incubated as in the previous steps. Stained samples were analyzed with a cytometer (FACSCalibur; BD Bioscience).