Wild-type HγC-Crys has four tryptophans, two in each domain. The primary sequence of HγC-Crys shares 71% identity with HγD-Crys, whose spectroscopic properties had been well characterized.
17,24 Tryptophan fluorescence emission was selectively monitored by using an excitation wavelength of 295 nm and monitoring emission from 310 to 400 nm. Native HγC-Crys displayed a fluorescence emission maximum at 325 nm. On denaturing in 5.5 M Gdn HCl, the fluorescence emission maximum shifted to 350 nm and increased in intensity (
Fig. 1). Such behavior is very similar to that of HγD-Crys.
17 In the βγ-crystallin family, tryptophan fluorescence is quenched in the native state and increases on unfolding.
24,25 The quenching depends on intimate side-chain and bound-water interactions.
26 When native HγC-Crys was transferred to 50 mM sodium acetate buffer at pH 3, the fluorescence emission maximum shifted to 330 nm with decreased intensity. This shift and change in intensity of emission maximum were indicative of a perturbed environment for the buried tryptophans.
Conformational changes of tryptophans were further probed using UV resonance Raman spectrometry. UV resonance Raman spectra of HγC-Crys were collected at pH 7, 3, and 2, with an excitation wavelength of 229 nm. At 229 nm excitation, the vibrational modes of Tyr and Trp residues are the dominant features of the UVRR spectra. The UVRR spectra show several changes in Trp modes as a function of pH, suggesting a change in the local environment of the tryptophans. The W3 mode, appearing at 1546 cm
−1 in the pH 7 spectrum, is upshifted to 1551 cm
−1 in the pH 3 and pH 2 spectra. The frequency of this mode is correlated with tryptophan side-chain conformation,
27 and the upshift in frequency suggests a change in the orientation of one or more Trp residues. The mode also noticeably broadened at pH 2, which is attributed to a more heterogeneous environment and a greater degree of side chain flexibility. These features are consistent with pH-induced unfolding of the protein, as originally described by Rainer Jaenicke's group.
28
Another Trp vibrational mode observed to change with decreasing pH is the W7 Fermi doublet (1360/1340 cm
−1). The Fermi doublet is a well-known marker of hydrophobicity of the Trp environment.
29 In hydrophobic environments, the 1360 cm
−1 component of the doublet is expected to increase in intensity, leading to a 1360/1340 cm
−1 ratio greater than 1, as seen in the pH 7 and pH 3 spectra. In aqueous environments, the 1360 cm
−1 intensity decreases, leading to a 1360/1340 cm
−1 ratio closer to 1, as seen in the pH 2 spectra, indicating a greater degree of solvent exposure at pH 2 as the result of unfolding. In addition to the change in 1360/1340 intensity ratio, the frequencies of the 1360 cm
−1 component of the Fermi doublet is seen to downshift in frequency from 1360 cm
−1 at pH 7, to 1357 cm
−1 at pH 3, and 1350 cm
−1 at pH 2. The band shape is markedly changed at pH 2, also consistent with a significant change in local environment, as would be caused by unfolding.
The vibrational mode W17 (870 cm
−1), an indicator of Trp H-bond strength, is seen to increase from 870 cm
−1 at pH 7 (strong H-bond) to 877 cm
−1 (moderate H-bond with solvent water) at pH 2, indicative of a weakening of H-bond strength at that position. This frequency downshift most likely results from increased flexibility of the Trp side chain and transient associations with water molecules, yielding weaker H-bonds.
30
Interestingly, all three UVRR markers of side-chain conformation and H-bonding (W3, W7, and W17) reveal pronounced changes in frequency, shape and intensity when the pH is changed from pH 3 to pH 2. Control spectra of Trp at pH 2 and pH 3 demonstrate that these changes are not associated with the changes in solution conditions but rather arise from changes in local protein environment (data not shown). The spectral changes observed from pH 7 to pH 3 are relatively moderate, indicative of slight changes in conformation and environment, suggestive of a partially folded state. The dramatic changes observed between pH 3 and pH 2 for the W17, W7 fermi doublet, and the W3 modes are consistent with significant changes in conformation and suggest that the protein is mainly unfolded at pH 2 (
Fig. 2).