Eyes collected 1 week after intravitreal injection were fixed by immersion in 4% paraformaldehyde (PFA) in 0.1 M phosphate buffer for 24 hours, dehydrated, embedded in paraffin, and sectioned (4 μm thick) through the optic disc. For cross sections, 4-mm segments of the optic nerves were obtained starting 1 mm behind the globe. These segments of optic nerve were also fixed by immersion in 4% PFA for 24 hours, dehydrated, and embedded in paraffin. Cross sections (1 μm thick) were cut beginning 1 mm from the globe. Deparaffinized sections were incubated with 1% bovine serum albumin (BSA) and then reacted with primary antibodies against p-PS1 antibody (1:100; Santa Cruz Biotechnology), APP antibody (1:50; Cell Signaling), APP antibody (1:50; Abbiotec, San Diego, CA), TNF receptor 1 antibody (1:50; Novus Biologicals, Littleton, CO), TNF receptor 2 antibody (1:50; Novus Biologicals), vimentin (a marker of astrocyte; 1:50; Chemicon International), GFAP (a marker of astrocyte; 1:100; Sigma-Aldrich), GFAP (1:100; DAKO Corporation), or neurofilament-L (a marker of neurons; 1:100; DAKO Corporation) diluted in 1% BSA overnight at 4°C. Sections were then exposed to the following secondary antibodies: FITC-labeled anti-rabbit antibody (1:100; Cappel), FITC-labeled anti-rat antibody (1:100; Cappel), FITC-labeled anti-mouse antibody (1:100; Cappel), rhodamine-labeled anti-rabbit antibody (1:100; Cappel), or rhodamine-labeled anti-mouse antibody (1:100; Cappel). The samples were counterstained with 4′,6-diamidino-2-phenylindole (DAPI; Vectashield with DAPI; Vector Laboratories, Burlingame, CA). Negative controls were performed by replacing the primary antibody with PBS or serum.
p-PS1-positive cells in optic nerve cross sections were analyzed in the images captured by a fluorescence confocal microscope. Three images were obtained randomly, and the three sections were used for quantification in one optic nerve (nine images in each eye). The acquired images were quantified using Aphelion image processing software, which can also calculate the total image intensity. Data from three sections of each eye were averaged for one eye, and five eyes were examined for each experimental condition.