By design, this study focused on clear local thinning of the RNFL. Consequently, shallow damage might be missed by our procedures. Or, put a different way, we do not know the false-negative (miss) rate of our technique when it comes to detecting glaucoma, although determining sensitivity, or specificity, was not the purpose here. In other words, there are probably eyes in this study with glaucomatous damage that are not included in the 55 eyes with local defects. However, this limitation has minimal impact on our two main conclusions. First, it does not affect our conclusion that there are defects in the SN portion of the disc. Second, even in the unlikely event that these shallow defects showed a better correspondence with RNFL thickness or BV locations, one would have to assume that these factors predict the frequency of occurrence, but not the depth, of damage in order to rescue the thickness or BV hypotheses.
A second limitation concerns the definition of a local defect. The variability in RNFL thickness among healthy individuals is not constant around the disc. Therefore, a fixed amount of thinning will not be equally detectable at all disc locations. For this reason, we defined abnormal RNFL thinning based on the 99% confidence limit of healthy controls. However, there is no “right” way to take variability into consideration and we cannot rule out the possibility that a different method of controlling for normal variability would produce a different result.
A related problem concerns the relation of the depth of a local RNFL defect and the loss of associated retinal ganglion cell (RGC) axons. Whether depth is taken as the difference from the mean of controls or the difference below the 99% confidence limit, we cannot assume that a constant loss in RNFL thickness equals a constant loss in number of RGC axons. In fact, given that the width of the RGC axon is smaller in the macula than the more peripheral regions of the retina, OCT RNFL measures may underestimate the number of axons damaged in the portion of the disc associated with the macula (i.e., the temporal quadrant and temporal portion of the inferior quadrant).