To understand how the different collagen XVIII isoforms contribute to structures in the eye, we determined the localization of
Col18a1-encoded proteins in mice that were deficient for the short form (which is transcribed using promoter 1 and called
Col18a1P1/P1 ), or mice that were deficient for the medium and long forms (which are transcribed using promoter 2 and called
Col18a1P2/P2 ). Eyes were stained with an antibody that labels all isoforms (anti–all-18) and an antibody that labels only the medium and long isoforms (anti–medium/long-18, antibody epitopes marked in
Fig. 1). In control FVB/N mice, the anti–all-18 antibody labeled the BM zones of the ciliary body, iris epithelia, lens capsule, inner limiting membrane, and Bruch's membrane (
Figs. 8A,
8E). In
Col18a1P2/P2 mice, which lack the medium and long isoforms, labeling with anti–all-18 antibody was similar to FVB/N control mice, indicating that the short isoform is present in all of these locations (
Figs. 8C,
8G). In
Col18a1P1/P1 mice that lack the short isoform, the anti–all-18 antibody did not label the lens capsule and inner limiting membrane, indicating that the medium and long isoforms are not highly expressed at these sites, and that the signal in control mice was detecting the short isoform (
Figs. 8B,
8F). Consistent with these data, the anti–medium/long-18 antibody labeled the ciliary and iris epithelia, and Bruch's membrane, but did not label the lens capsule or inner limiting membrane in FVB/N control and
Col18a1P1/P1 mice (
Supplementary Figs. S3A,
S3B,
S3E,
S3F). This antibody showed no labeling in
Col18a1P2/P2 mice (
Supplementary Figs. S3C,
S3G), and both antibodies showed no specific labeling in
Col18a1−/− eyes that were used as negative controls (
Figs. 8D,
8H,
Supplementary Figs. S3D,
S3H). It should be noted that the anti–medium/long-antibody gave unspecific staining in some of the posterior eye structures, but specific staining was observed in the Bruch's membrane (
Supplementary Figs. S3E–H). In addition, the vessels around the lens capsule (tunica vasculosa lentis [TVL]) were positive for collagen XVIII. The positive signal in TVL was seen in
Col18a1P2/P2 mice with the anti–all-antibody (
Fig. 8C) and in
Col18a1P1/P1 with the anti–medium/long-antibody (
Supplementary Fig. S3B), indicating that this structure contains both isoforms.