The limbus of mouse eyes was imaged at various depths below the surface of the tissue in order to better resolve the region shown in
Figure 5B. The images shown in
Figures 6A through
6F are oriented parallel to the surface of the eye, collected at various depths (4, 8, 14, 20, 26, and 32 μm, respectively) below the surface of the corneal/scleral interface. The conjunctiva/sclera is located at the top of all images, with the cornea located below. The CARS signal from the lipid membranes of the corneal EP extends approximately 26 μm below the surface of the tissue (
Figs. 6A–E); in many cases the cells are shown in cross-section with a bright ring CARS signal surrounding a dark intracellular space (
Figs. 6C,
6D). The CARS signal from the conjunctiva, being much thinner than the corneal EP, is evident within 4 μm of the tissue surface (
Fig. 6A, top), but is absent in deeper sections. The green TPAF of the S is visible from 8 to 32 μm below the surface of the tissue (
Figs. 6B–E, top), while the TPAF of the corneal ST only becomes evident at 26 μm below the surface of the cornea (
Fig. 6E, bottom). The different organization of the collagen in the S and ST is shown in
Figure 6F: The collagen fibers of the S appear thicker than the fibers in the ST, while the fibers of the ST are more closely packed with fewer spaces between them. Another noticeable fact is that the green TPAF signal from the collagen fibers of the S are separated from the corneal EP by the gap of the limbus. Similar to the circular CARS structures seen in
Figure 5B, occasional cells are also visible seen in this gap region (
Fig. 6C, arrows). Images shown in
Figure 6 are representative of images collected from three different mouse eyes. A 3D rendering of these image stacks is included in
Supplementary Movie S2.