ELISA parameters are summarized in Supplementary Table S1 (see Supplementary Material and
Supplementary Table S1). Complement protein standards were obtained commercially (Complement Technology, Inc., Tyler, TX). Test sample (BM/C lysates, vitreous fluid, and plasma) and standard curve dilutions were prepared in PBS supplemented with 0.5% bovine serum albumin (BSA; Equitech-Bio Inc., Kerrville, TX) and 0.5% Tween-20 (Sigma, Atlanta, GA). The capture antibodies for each assay (see Supplementary Material and
Supplementary Table S1) were coated on 384-well high-bind ELISA plates (Greiner Bio-One, Monroe, NC) overnight at 4°C. Plates were washed 3 times with 0.05% Tween-20 in PBS, blocked for 1 to 2 hours with 0.5% BSA, and washed. Test samples and controls were added to the preblocked plates and incubated for 2 hours. After the unbound antigens were washed away, detection antibodies (biotinylated or horseradish peroxidase [HRP] conjugated) were added and incubated for 1 to 2 hours (see Supplementary Material and
Supplementary Table S2). For biotinylated antibodies, streptavidin-HRP (Amersham Pharmacia Biotech, Piscataway, NJ) diluted 1/10,000 in 0.5% BSA/0.5% Tween-20 in PBS was added to the washed plates. Following 30-minute incubation and a final wash, tetramethyl benzidine (Kirkegaard & Perry Laboratories, Gaithersburg, MD) was added and the color was developed for 5 to 7 minutes. The reaction was stopped by adding 1 M phosphoric acid. The optical density was measured using a microplate reader (450 nm, 650 nm reference) and the sample concentrations were calculated from 4-parameter fits of the standard curves. The C3b ELISA (recognizes C3b, iC3b, and C3c) was performed as described by Katschke et al.
27 The ELISA analyses of C3a des Arg (hereafter named C3a) and C4a des Arg (hereafter named C4a) (BD Biosciences, San Diego, CA), as well as albumin, transferrin, and human IgG (Bethyl Laboratories, Montgomery, TX) were performed as per manufacturer's instructions. The minimum quantifiable concentrations for assays developed in-house are listed in the online supplement (see Supplementary Material and
Supplementary Table S2). We acknowledge the limitations of analyzing complement proteins in tissues that potentially have been affected by postmortem processes.
25 To avoid overestimation of complement activation due to serum contamination, we excluded samples with an albumin:transferrin ratio greater than 13 and vitreous samples with albumin:transferrin ratio greater than 9 (see Supplementary Material and
Supplementary Table S2) since these samples are more likely to have been contaminated with plasma proteins.
28 The sample analysis of complement proteins was done at 2 different time-points: phase 1 and phase 2 (see Supplementary Material and
Supplementary Tables S3 and
S4; see also under Statistical Analysis of the Materials and Methods section).